| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,923,993 – 7,924,083 |
| Length | 90 |
| Max. P | 0.507539 |
| Location | 7,923,993 – 7,924,083 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 78.94 |
| Shannon entropy | 0.39948 |
| G+C content | 0.63889 |
| Mean single sequence MFE | -30.32 |
| Consensus MFE | -26.55 |
| Energy contribution | -27.72 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.48 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.507539 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7923993 90 - 23011544 ------------CCCCCCCCCCCCCCCCUCAGCGACAUGGAAAGAGCGCCACGCGCCGCCGCCAGCUCUUCUGGGCGCCAAGGCGGCAUUCAAAUUUGAGCU ------------...............(((((((...(((........))))))((((((....((((....)))).....)))))).........)))).. ( -28.80, z-score = -0.42, R) >droSim1.chr2L 7719999 102 - 22036055 UCAUUCCCCUCCCCCCCUCCUCCACCGCUCAGCAAGAAGGAAAGAGCGCCACGCGCCGCCGCCAGCUCUUCUGGGCGCCAAGGCGGCAUUCAAAUUUGAGCU ..........................((((((...(((.....(.((((...)))))((((((.((((....)))).....)))))).)))....)))))). ( -31.20, z-score = -0.40, R) >droSec1.super_3 3438293 97 - 7220098 -----UCAUCCCCCCCUCCCUCCAACGCUCAGCGACAAGGAAAGAGCGCCACGCGCCGCCGCCAGCUCUUCUGGGCGCCAAGGCGGCAUUCAAAUUUGAGCU -----.....................((((((((....((........)).)))((((((....((((....)))).....)))))).........))))). ( -31.30, z-score = -0.63, R) >droYak2.chr2L 17354003 97 + 22324452 -----UCUUCCCCCCUUCCCCUCAUAGCUCAUAGACAAGCAAAGAGCGCCACGCGCCGCCGCCAGCUCUUCUGGGCGCCAAGGCGGCAUUCAAAUUUGAGCU -----....................((((((............(.((((...)))))((((((.((((....)))).....)))))).........)))))) ( -30.70, z-score = -1.36, R) >droEre2.scaffold_4929 16846320 89 - 26641161 -------------UCUGCCCCCCUCCGCUCAGCGACAAGAAAAGAGCGCCACGCGCCGCCGCCAGCUCUUCUGGGCGCCAAGGCGGCAUUCAAAUUUGAGCU -------------.............((((((...........(.((((...)))))((((((.((((....)))).....))))))........)))))). ( -30.90, z-score = -0.43, R) >droAna3.scaffold_12943 3656091 81 + 5039921 ---------------------UCGGCAGAACGAGGUGGAUAGAGAGCGCCACGCGCCGCCGCCAGCUCUUCUGGGCGCCAAGGCGGCAUUCAAAUUUGAGCU ---------------------(((......))).((((...(....).))))((((((((....((((....)))).....))))))..(((....))))). ( -29.00, z-score = 0.36, R) >consensus ____________CCCCCCCCCCCACCGCUCAGCGACAAGGAAAGAGCGCCACGCGCCGCCGCCAGCUCUUCUGGGCGCCAAGGCGGCAUUCAAAUUUGAGCU ..........................((((((...........(.((((...)))))((((((.((((....)))).....))))))........)))))). (-26.55 = -27.72 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:24:43 2011