Locus 10547

Sequence ID dm3.chr3R
Location 14,631,150 – 14,631,243
Length 93
Max. P 0.782669
window14502

overview

Window 2

Location 14,631,150 – 14,631,243
Length 93
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 89.91
Shannon entropy 0.15482
G+C content 0.48838
Mean single sequence MFE -25.90
Consensus MFE -25.04
Energy contribution -24.48
Covariance contribution -0.56
Combinations/Pair 1.14
Mean z-score -1.10
Structure conservation index 0.97
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.67
SVM RNA-class probability 0.782669
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 14631150 93 + 27905053
UUGUUUGCUCAGCUCAUGCAUUUCUAUGAGCUCGUCGAGUGUGAAAAGUGUGUGGGUUGCGGUAAGUUCGUUCGGUUGGUCUGGGAGUUCUGU---------
.....((((((((((((((((((......((((...)))).....)))))))))))))).))))((..(.(((((.....))))).)..))..--------- ( -24.60, z-score =  -1.18, R)
>droSim1.chr3R 20672472 93 - 27517382
UUGUUUGCUCAGCUCAUGCAUUUCUAUGAGCUCGUCGAGUGUGAAAAGUGUAUGGGUUGUGGUGAGUUCGUUCGGUUGCUCUGGGAGCUCUGU---------
......(((((((((((((((((......((((...)))).....)))))))))))))).)))((((((..((((.....))))))))))...--------- ( -29.90, z-score =  -2.32, R)
>droYak2.chr3R 3289997 102 + 28832112
UUGUUUGCUCAGCUCAUGCAUUUCUAUGAGCUCGUCGAGUGUGAAAAGUGUGUUGGCUGUGGUGAGUUCGUUCGGUUGGUCUGGAAGUUCUAGGGGUUAUGG
...((..(((((((.((((((((......((((...)))).....)))))))).))))).))..)).............(((((.....)))))........ ( -22.80, z-score =   0.36, R)
>droEre2.scaffold_4770 10742684 93 - 17746568
UUGUUUGCUCAGCUCAUGCAUUUCUAUGAGCUCGUCGAGUGUGAAAAGUGUGUGGGCUGUGGUGAGUUCGUUCGGUUGGUCUGGGAGUUCUGG---------
...((..((((((((((((((((......((((...)))).....)))))))))))))).))..))....(((((.....)))))........--------- ( -26.30, z-score =  -1.26, R)
>consensus
UUGUUUGCUCAGCUCAUGCAUUUCUAUGAGCUCGUCGAGUGUGAAAAGUGUGUGGGCUGUGGUGAGUUCGUUCGGUUGGUCUGGGAGUUCUGG_________
...((((((((((((((((((((......((((...)))).....)))))))))))))).))))))....(((((.....)))))................. (-25.04 = -24.48 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:26:00 2011