| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,608,919 – 14,608,975 |
| Length | 56 |
| Max. P | 0.982485 |
| Location | 14,608,919 – 14,608,975 |
|---|---|
| Length | 56 |
| Sequences | 3 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 86.83 |
| Shannon entropy | 0.18038 |
| G+C content | 0.37976 |
| Mean single sequence MFE | -12.70 |
| Consensus MFE | -11.90 |
| Energy contribution | -11.57 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.11 |
| SVM RNA-class probability | 0.982485 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14608919 56 + 27905053 ACACUGGUUUUUUAUUGCUUCACCUUUAUGGUGAUAUUCUAAGUAUGCGAUAAGCA ..........((((((((.(((((.....)))))(((.....))).)))))))).. ( -11.60, z-score = -1.75, R) >droSec1.super_5 574902 55 - 5866729 ACUCCAGUUUUUUAUUGCC-CGCCUUUAUGGUGACAUUUUAAGUGUGCGAUAAGCU ..........((((((((.-(((....(((....))).....))).)))))))).. ( -13.70, z-score = -2.65, R) >droSim1.chr3R 20650560 55 - 27517382 ACUCCAGUUUUAUAUUGCC-CGCCUUUAUGGUGACAUUUUAAGUGUGCGAUAAGCU .....((((...((((((.-(((....(((....))).....))).)))))))))) ( -12.80, z-score = -2.13, R) >consensus ACUCCAGUUUUUUAUUGCC_CGCCUUUAUGGUGACAUUUUAAGUGUGCGAUAAGCU ..........((((((((..((((.....))))((((.....)))))))))))).. (-11.90 = -11.57 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:58 2011