| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,593,569 – 14,593,673 |
| Length | 104 |
| Max. P | 0.610067 |
| Location | 14,593,569 – 14,593,673 |
|---|---|
| Length | 104 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 89.64 |
| Shannon entropy | 0.20601 |
| G+C content | 0.29230 |
| Mean single sequence MFE | -20.88 |
| Consensus MFE | -16.46 |
| Energy contribution | -15.97 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.610067 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14593569 104 - 27905053 --------GGCCUAAUUGUUUUUUAAGUUCGAAAUUAGUUAACAAAUUUGUUAUCAAAUGUUUUGCAGUUUCGACAACAGAAUUCAAUUAAUUGCAAAAACAGACAAG---GCAA--- --------.(((((((((..((((....((((((((.((.((((..((((....))))))))..))))))))))....))))..)))))).(((......)))....)---))..--- ( -20.30, z-score = -1.71, R) >droSim1.chr3R 20626610 104 + 27517382 --------GGCCUAAUUGUUUUUUAAGUUCGAAAUUAGUUAACAAAUUUGUUAUCAAAUGUUUUGCAGUUUCGACAACAGAAUUCAAUUAAUUGCAAAAACUGACAAG---GCAA--- --------.(((((((((..((((....((((((((.((.((((..((((....))))))))..))))))))))....))))..)))))).(((((.....)).))))---))..--- ( -21.50, z-score = -1.86, R) >droSec1.super_5 559836 104 + 5866729 --------GGCCUAAUUGUUUUUUAAGUUCGAAAUUAGUUAACAAAUUUGUUAUCAAAUGUUUUGCAGUUUCGACAACAGAAUUCAAUUAAUUGCAAAAACUGACAAG---GCAA--- --------.(((((((((..((((....((((((((.((.((((..((((....))))))))..))))))))))....))))..)))))).(((((.....)).))))---))..--- ( -21.50, z-score = -1.86, R) >droYak2.chr3R 3252417 104 - 28832112 --------GGCCUAAUUGUUUUUUAAGUUCGAAAUUAGUUAACAAAUUUGUUAUCAAAUGUUUUGCAGUUUCGACAACAGAAUUCAAUUAAUUGCAAAAACUGACAAG---GCAA--- --------.(((((((((..((((....((((((((.((.((((..((((....))))))))..))))))))))....))))..)))))).(((((.....)).))))---))..--- ( -21.50, z-score = -1.86, R) >droEre2.scaffold_4770 10705935 104 + 17746568 --------GGCCUAAUUGUUUUUUAAGUUCGAAAUUAGUUAACAAAUUUGUUAUCAAAUGUUUUGCAGUUUCGACAACAGAAUUCAAUUAAUUGCAAAAACUGACAAG---GCGA--- --------.(((((((((..((((....((((((((.((.((((..((((....))))))))..))))))))))....))))..)))))).(((((.....)).))))---))..--- ( -21.50, z-score = -1.65, R) >droAna3.scaffold_12911 2949585 104 - 5364042 --------GGCCUAAUUGUUUUUUAAGUUCGAAAUUAGUUAACAAAUUUGUUAUCAAAUGUUUUGCAGUUUCGACAACAGAAUUCAAUUAAUUGCAAAAACUGACAAG---ACAA--- --------.((.((((((..((((....((((((((.((.((((..((((....))))))))..))))))))))....))))..))))))...)).............---....--- ( -17.40, z-score = -0.63, R) >dp4.chr2 14721441 104 - 30794189 --------GGCCUAAUUGUUUUUUAAGUUCGAAAUUAGUUAACAAAUUUGUUAUCAAAUGUUUUGCAGUUUCGACAACAGAAUUCAAUUAAUUGCUAAAACUGACAAG---ACAA--- --------(((.((((((..((((....((((((((.((.((((..((((....))))))))..))))))))))....))))..))))))...)))............---....--- ( -18.00, z-score = -0.90, R) >droPer1.super_0 6130332 104 + 11822988 --------GGCCUAAUUGUUUUUUAAGUUCGAAAUUAGUUAACAAAUUUGUUAUCAAAUGUUUUGCAGUUUCGACAACAGAAUUCAAUUAAUUGCUAAAACUGACAAG---ACAA--- --------(((.((((((..((((....((((((((.((.((((..((((....))))))))..))))))))))....))))..))))))...)))............---....--- ( -18.00, z-score = -0.90, R) >droWil1.scaffold_181108 2821457 117 - 4707319 GCACUGGUCGCCUAAUUGUUUUUUAAGUUCGAAAUUAGUUAACAAAUUUGUUAUCAAAUG-UUUGCAGUUUCGACAACAAAAUUCAAUUAAUUGCAAAAACUGACAAAUGCUCAACAC (((...(((((.((((((..((((....((((((((.((.((((..((((....))))))-)).))))))))))....))))..))))))...)).......)))...)))....... ( -21.71, z-score = -1.25, R) >droVir3.scaffold_12822 3122297 111 - 4096053 ------AGCGCCUAAUUGUUUUUUAAGAUUGAAAUUAGUAAACUAAUUUGUUAUCAAAUG-UUUGCAGUUUCGACAACAAAAUUCAAUUAAUUGCCAAAACUGAGAAGCGCCUCGCAC ------.((((.((((((..((((....((((((((.((((((..(((((....))))))-)))))))))))))....))))..))))))...)).......(((......))))).. ( -23.70, z-score = -2.04, R) >droMoj3.scaffold_6540 19029925 109 + 34148556 --------AGCCUAAUUGUUUUUUAAGAUUGAAAUUAGUAAACUAAUUUGUUAUCAAAUG-UUUGCAGUUUCGACAACAAAAUUCAAUUAAUUGCCAAAACUGACAAACGCUACGCAC --------(((.((((((..((((....((((((((.((((((..(((((....))))))-)))))))))))))....))))..)))))).(((.((....)).)))..)))...... ( -20.40, z-score = -1.74, R) >droGri2.scaffold_14830 2545935 109 + 6267026 --------AGCCUAAUUGUUUUUUAAGAUUGAAAUUAGUAAACUAAUUUGUUAUCAAAUG-UUUGCAGUUUCGACAACAAAAUUCAAUUAAUUGUCAAAACUGACAAACGCUCCGCAC --------.((.((((((..((((....((((((((.((((((..(((((....))))))-)))))))))))))....))))..)))))).((((((....)))))).......)).. ( -25.00, z-score = -3.46, R) >consensus ________GGCCUAAUUGUUUUUUAAGUUCGAAAUUAGUUAACAAAUUUGUUAUCAAAUGUUUUGCAGUUUCGACAACAGAAUUCAAUUAAUUGCAAAAACUGACAAG___GCAA___ .........((.((((((..((((....((((((((.((......(((((....))))).....))))))))))....))))..))))))...))....................... (-16.46 = -15.97 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:54 2011