| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,584,771 – 14,584,840 |
| Length | 69 |
| Max. P | 0.717652 |
| Location | 14,584,771 – 14,584,840 |
|---|---|
| Length | 69 |
| Sequences | 6 |
| Columns | 74 |
| Reading direction | forward |
| Mean pairwise identity | 59.05 |
| Shannon entropy | 0.75409 |
| G+C content | 0.50553 |
| Mean single sequence MFE | -13.68 |
| Consensus MFE | -3.76 |
| Energy contribution | -4.23 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.27 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.717652 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14584771 69 + 27905053 --UUCCCCGCUUAACUUACGUCACGUAAC-AGUCGUGACUCACGCUGCACUCUCGUUGCCCUGGUCAUCGCA-- --......((.........((((((....-...))))))....((.((......)).))..........)).-- ( -12.70, z-score = -0.20, R) >droYak2.chr3R 3242855 69 + 28832112 --AUCCCAGCUUCCCUUUAUUCUCUUACC-AGUCGUUACUCACGCAGUACUCCCGCUGCCCUGGCCAUAUCA-- --.........................((-((..((.....))(((((......))))).))))........-- ( -9.50, z-score = -1.86, R) >droSec1.super_5 551233 69 - 5866729 --UUCCCCACUUAACUUACUUCAUGUAAC-AGUCGUGACUCACGCAGCACUCCCGCUGCCCUAGUCAUCUCA-- --.............((((.....)))).-.(..((((((...(((((......)))))...))))))..).-- ( -16.30, z-score = -4.71, R) >droSim1.chr3R 20618007 70 - 27517382 --UUCCCCGCUUAACUUACUUCGUGUAACCAGUCGUGACUCACGCAGCACUCCCGCUGCCCUGGCCUUCUCA-- --.............((((.....))))((((..(((...)))(((((......))))).))))........-- ( -14.40, z-score = -1.73, R) >droMoj3.scaffold_6540 19018962 62 - 34148556 ---------CUUAACUUUUAUCGGGCUUACAAGCUUUUCGC---CAGCACUGUUGCUCAACAGCUGUUAGCGCA ---------.............(((((....)))))..(((---.(((((((((....))))).)))).))).. ( -14.40, z-score = -0.66, R) >droGri2.scaffold_14830 2535784 70 - 6267026 UUCUACGAAUUUAGCUUUUAUCGAGCCAGUGAACUUUA-AC---CAGCACUGUUGUCGAUCAGCUGUUCACGAA ......((((..((((...(((((..(((((.......-..---...)))))...))))).))))))))..... ( -14.80, z-score = -1.10, R) >consensus __UUCCCCGCUUAACUUACUUCGCGUAAC_AGUCGUGACUCACGCAGCACUCCCGCUGCCCUGGUCAUCUCA__ ...........................................(((((......)))))............... ( -3.76 = -4.23 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:53 2011