| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,915,695 – 7,915,748 |
| Length | 53 |
| Max. P | 0.914919 |
| Location | 7,915,695 – 7,915,748 |
|---|---|
| Length | 53 |
| Sequences | 5 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 87.36 |
| Shannon entropy | 0.22174 |
| G+C content | 0.40377 |
| Mean single sequence MFE | -9.06 |
| Consensus MFE | -9.08 |
| Energy contribution | -8.44 |
| Covariance contribution | -0.64 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.16 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.914919 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7915695 53 + 23011544 GAUUUCACAUCGAUCGAAGUUGCCCCAAGGCGAUAAAGGAAAUAUAUCAUGAA .(((((...((....)).((((((....))))))....))))).......... ( -9.10, z-score = -0.67, R) >droSim1.chr2L 7711660 53 + 22036055 GAUUUCACAUCGAUCGAAGUUGCCCCCAGGCGAUAAAGGAAAUAUAUCAAGAA .(((((...((....)).((((((....))))))....))))).......... ( -9.10, z-score = -0.95, R) >droSec1.super_3 3429957 53 + 7220098 GAUUUCACAUCGAUCGAAGUUGCCCCCAGGCGAUAAAGGAAAUAUAUCAAGAA .(((((...((....)).((((((....))))))....))))).......... ( -9.10, z-score = -0.95, R) >droYak2.chr2L 17345511 53 - 22324452 GAUUUCACAUUGAUCAAAGUUGCCCCAAGGCAAACAAAGAAAUAUAUCGAGAA ..((((.............(((((....))))).....((......)))))). ( -7.10, z-score = -1.26, R) >droEre2.scaffold_4929 16837903 53 + 26641161 GAUUUCACAUCGAUCGACGUUGCCCUACGGCAGCCAAAGAAAUUUAUCAAGAA ((((((...((....)).((((((....))))))....))))))......... ( -10.90, z-score = -1.95, R) >consensus GAUUUCACAUCGAUCGAAGUUGCCCCAAGGCGAUAAAGGAAAUAUAUCAAGAA .(((((...((....)).((((((....))))))....))))).......... ( -9.08 = -8.44 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:24:42 2011