| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,572,452 – 14,572,502 |
| Length | 50 |
| Max. P | 0.857312 |
| Location | 14,572,452 – 14,572,502 |
|---|---|
| Length | 50 |
| Sequences | 4 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 94.67 |
| Shannon entropy | 0.08490 |
| G+C content | 0.50500 |
| Mean single sequence MFE | -15.47 |
| Consensus MFE | -12.80 |
| Energy contribution | -13.30 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.857312 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14572452 50 + 27905053 GGAAUCGCAAACUGGCGAUUACCACACGUGGGUGGUUUACAGUUAGCCAC ..((((((......)))))).(((....)))((((((.......)))))) ( -15.50, z-score = -1.94, R) >droYak2.chr3R 3230542 50 + 28832112 GGAAUCGCAGACUGGCGAUUACCACACGUGGGUGGUUUACAGUUACCCAC ((((((((......)))))).))....((((((..(.....)..)))))) ( -19.40, z-score = -3.20, R) >droSec1.super_5 538992 50 - 5866729 GAAAUCGCAAACUAGCGAUUACCACACGUGGGUGUUUUACAGUUAGCCAC ..((((((......)))))).......((((.((.........)).)))) ( -11.40, z-score = -1.47, R) >droSim1.chr3R 20605785 50 - 27517382 GGAAUCGCAAACUAGCGAUUACCACACGUGGGUGGUUUACAGUUAGCCAC ..((((((......)))))).(((....)))((((((.......)))))) ( -15.60, z-score = -2.57, R) >consensus GGAAUCGCAAACUAGCGAUUACCACACGUGGGUGGUUUACAGUUAGCCAC ..((((((......)))))).(((....)))((((((.......)))))) (-12.80 = -13.30 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:52 2011