| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,536,590 – 14,536,734 |
| Length | 144 |
| Max. P | 0.554070 |
| Location | 14,536,590 – 14,536,734 |
|---|---|
| Length | 144 |
| Sequences | 8 |
| Columns | 150 |
| Reading direction | forward |
| Mean pairwise identity | 70.34 |
| Shannon entropy | 0.56072 |
| G+C content | 0.62414 |
| Mean single sequence MFE | -44.35 |
| Consensus MFE | -17.65 |
| Energy contribution | -17.64 |
| Covariance contribution | -0.01 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.554070 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14536590 144 + 27905053 CACGUUUCUGCACUUGACUUGAGCAGCAGCUGCAGGCGGGCGACCCAGGAGCAACCCC-UGGUGCUGAUAAAAGCCCGCC--AACCACCAGCACCAGC---ACCACCACCAUCAUCGCACCAGGGUCAAGUGCGUCCACCCACCUGACCC ...(((.((((.(.......).)))).)))(((.((((((((..(((((.......))-)))..)........)))))))--........((....))---...............)))...((((((.(((.(....).))).)))))) ( -46.30, z-score = -0.99, R) >droEre2.scaffold_4770 10649402 120 - 17746568 CACGUUUCUGCACUUGACUUGAGCAGC---UGCAGGCGGGCGACC-AGGAGCAACCCC-UGGUGCUGAUAAAAGCCCGCC--AGCCACCA---------------------CCAGCGCCCCAGGGUCAAGUGCGACCAUCCACC--ACCC ........((((((((((((..((.((---((..(((.(((((((-(((.......))-))))(((......))).))))--.)))....---------------------.))))))....))))))))))))..........--.... ( -48.80, z-score = -2.79, R) >droSec1.super_5 502442 132 - 5866729 CACGUUUCUGCACUUGACUUGAGCAGCAGCUGCAGGCGCUCGACCCAGGAGCAACCCC-UGGUGCUGAUAAAAGCCCGAC--AACCACCAGCACCA---------------CCGCCGCACCAGGGUCAAGUGCGUCCACCCACCUGACCC ...(((.((((.(.......).)))).)))(((.(((((((.......))))......-((((((((.............--......))))))))---------------..))))))...((((((.(((.(....).))).)))))) ( -44.91, z-score = -1.93, R) >droSim1.chr3R 20567972 147 - 27517382 CACGUUUCUGCACUUGACUUGAGCAGCAGCUGCAGGCGCUCGACCCAGGAGCAACCCC-UGGUGCUGAUAAAAGCCCGCC--AACCACCAGCACCAGCUCCGCCACCACCACCAUCGCACCAGGGUCAAGUGCGUCCACCCACCUGACCC .........(((((((((((..((.((....)).(((((((.......)))).....(-((((((((.............--......)))))))))....)))............))....)))))))))))(((.........))).. ( -47.51, z-score = -2.00, R) >droGri2.scaffold_15074 4810578 114 - 7742996 CACGUUUCUGCACUUGACUCGAGCAGCG--UCAAAGCAG----CAGCACAGCAACCCC-UGGCUUUGAUAAAAGCUUGGCA-UGUUGCAA---------------------------CCCCAGGGUCAAGUACAGCGACCCACCUGGGC- ...(((.(((.(((((((((..((.((.--.....)).)----)......(((((.((-.((((((....)))))).))..-.)))))..---------------------------.....))))))))).))).)))((....))..- ( -40.10, z-score = -1.59, R) >droWil1.scaffold_181130 2563713 123 + 16660200 CACGUUUCUGCACUUGACUUGAGCAGC---UGCAGGCGG----CCCAUGAGCAACCCC-CAAUGCAGAUGAAAGCUGGCCCCAGCAACCACCA-------------------UAUCCCCCCAGGGUCAAGAGCGACCUCCCACCUGGCCA ......((((((.(((.(....)))).---)))))).((----(((((..(((.....-...)))..)))...((((....))))........-------------------..........(((((......))))).......)))). ( -32.10, z-score = 0.83, R) >droPer1.super_0 9873945 129 + 11822988 CACGUUUCUGCACUUGACUCGAGCCGC---UGCCGACGAGCUGCUGGCGAACAACCCCCUGGUUCAGAUAAAAGCUCGCC---AGCGCUAGCCC---------------AGCCCCUCCCACAGGGUCAAGUGCGGCGGGCCACCCCACCC .........((((((((((((((..((---((......(((.((((((((.(((((....)))).........).)))))---))))))....)---------------)))..))).....)))))))))))((.(((....))).)). ( -51.30, z-score = -2.48, R) >dp4.chr2 20188194 126 - 30794189 CACGUUUCUGCACUUGACUCGAGCCGC---UGCCGAAGAGCUGCUGGCGAACAACCCC-UGGCUCAGAUAAAAGCUCGCU---AGCGCUAGCC----------------ACCCCCUCCCACAGGGUCAAGUGCGGCGG-CCACCCCACCU ...((..((((((((((((((((((((---.((......)).)).((.(......)))-.)))))........(((.((.---...)).))).----------------.............)))))))))))))..)-).......... ( -43.80, z-score = -1.17, R) >consensus CACGUUUCUGCACUUGACUUGAGCAGC___UGCAGGCGGGCGACCCAGGAGCAACCCC_UGGUGCUGAUAAAAGCCCGCC__AACCACCAGCA__________________CCACCGCCCCAGGGUCAAGUGCGGCCACCCACCUGACCC ........((((((((((((..(((.....)))...........................(((..........)))..............................................))))))))))))................ (-17.65 = -17.64 + -0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:47 2011