| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,526,463 – 14,526,583 |
| Length | 120 |
| Max. P | 0.563798 |
| Location | 14,526,463 – 14,526,583 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.66 |
| Shannon entropy | 0.46420 |
| G+C content | 0.42718 |
| Mean single sequence MFE | -30.17 |
| Consensus MFE | -13.98 |
| Energy contribution | -18.07 |
| Covariance contribution | 4.09 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.563798 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14526463 120 - 27905053 GAUGAUGAGGUGGGUCUGUAAUUUUCCAACCGAUACGAAAUUGUAUCUGCGGAAGCUGUGCGGGUGGACUACGCCUGCCAACAAUCAGUAUUGAAUUACCAGUUAAUUUAACUGAACCUG .......((((......((((((.......((((((...(((((....((....))((.(((((((.....))))))))))))))..))))))))))))((((((...)))))).)))). ( -34.71, z-score = -2.14, R) >droSim1.chr3R 20557882 120 + 27517382 GAUGAUGAUGUGGGUCUGUAAUAUCCCAACCGAUACGAAAUUGUAUCUGCGGAAGCUGUGUGGGUGGACUACGCCUGCCAGCAAUCAGUAUUGAAUUACCAGUUAAUUUAACUGAACCUG ..........((((..........))))...((((((....))))))...((..((((.(..((((.....))))..)))))..(((((..(((((((.....)))))))))))).)).. ( -34.70, z-score = -2.25, R) >droSec1.super_5 492117 120 + 5866729 GAUGAUGAAGUGGGUCUGUAAUUUCCCAACCGAUACGAAAUUGUAUCUGCGGAAGCUGUGUGGGUGGACUUCGCCUGCCAGCAAUCAGUAUUGAAUUACCAGUUAAUUUAACUGAACCUG ...........((((.......((((((...((((((....)))))))).))))((((.(..((((.....))))..)))))..(((((..(((((((.....)))))))))))))))). ( -33.90, z-score = -1.94, R) >droYak2.chrU 11898510 115 - 28119190 GUUGAUGAAGUGGGUCUGUAAUUCCCCAACCGAUAUGAAAUUUUAUCAGCGAAAGCUGUGUGGGUGGAAAA-GCCCGCCAGCAGCCAGUAUUGGAUUACCCUUUAAUUUAACUGAA---- (((((((((((..(((.((.........)).))).....)))))))))))....((((.((((((......-))))))))))...((((..(((((((.....)))))))))))..---- ( -34.50, z-score = -2.54, R) >droEre2.scaffold_4770 10639802 113 + 17746568 GGUGAUGAAGUGGGUCUGUAAUUUCCCAACCGAUAUCAAAUUGUAUCAGCGGAGGCUGAGUGGGUGGAAAA---CCCCCAGCAAUCAGUAUUGAAUUACCCCUUAAUUUUCCUGAA---- ((((((....((((..........))))..((((((...(((((.(((((....))))).((((.((....---)))))))))))..)))))).))))))................---- ( -30.60, z-score = -0.81, R) >droAna3.scaffold_13340 17084768 97 + 23697760 ----------GAAGUCUGUAAUUUUCCGGGCCAAACUCAAUUUAAUCAGCAAA-----CGUGCUCGGAUAUCCCCUUCCAUAAUUCAGUUUUAAAUUACCAGUUAAUUAAAC-------- ----------...(((((........)))))..((((.(((((((..((((..-----..)))).(((........)))...........)))))))...))))........-------- ( -12.60, z-score = -0.48, R) >consensus GAUGAUGAAGUGGGUCUGUAAUUUCCCAACCGAUACGAAAUUGUAUCAGCGGAAGCUGUGUGGGUGGACAACGCCUGCCAGCAAUCAGUAUUGAAUUACCAGUUAAUUUAACUGAA____ ..........((((..........))))...(((((......))))).......((((.(((((((.....)))))))))))..(((((..(((((((.....))))))))))))..... (-13.98 = -18.07 + 4.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:45 2011