| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,509,106 – 14,509,213 |
| Length | 107 |
| Max. P | 0.863893 |
| Location | 14,509,106 – 14,509,213 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 72.46 |
| Shannon entropy | 0.45553 |
| G+C content | 0.38964 |
| Mean single sequence MFE | -24.84 |
| Consensus MFE | -12.79 |
| Energy contribution | -15.39 |
| Covariance contribution | 2.60 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.863893 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14509106 107 - 27905053 AGAAAAUAGACAUUAGUCAAAGGUGCAUAGGUAAUCUGCCCCCCACACCAAGGAUAUGUGCUUUCUAUUUUGGGGAUAUCUGUUUAUUACUUGCUAGUGUCGUCUAG (((.....(((((((((...(((((.((((((.....)))(((((.....((((........))))....))))).........))))))))))))))))).))).. ( -25.50, z-score = -0.55, R) >droSim1.chr3R 20539491 91 + 27517382 AGAAAAUAGACAUUAGUCAAAGGUGCAUAGGUAAUCUGCC----------------UGUGGUUACUAUUUUGGGGAUAUUUGUGUAUGACUUGCUAGUGUCGUCUAG (((.....((((((((.(((..(((((((((((.(((.((----------------.((((...))))...))))))))))))))))...))))))))))).))).. ( -26.00, z-score = -2.42, R) >droSec1.super_5 474975 91 + 5866729 AGAAAAUAGACAUUAGUCAAAGGUGCAUAGGUAAUCUGCC----------------UGUGGUUACUAUUUUGGGGAUAUCUGUGUAUUACUUGCUAGUGUCGUUUAG ........((((((((.(((.((((((((((((.(((.((----------------.((((...))))...)))))))))))))))))..)))))))))))...... ( -28.70, z-score = -3.54, R) >droYak2.chr3R 3161485 96 - 28832112 AGAAAACAGAUAUUACUUCUAGAUGCAAAGGUAAUUUGCCU--AACAACGAGGACAUGCGGUUUCCAAUUUGGGAA------UGUAUUACUUGUUAGUGUC---UAG ..................((((((((..((((.....))))--...((((((...(((((.(((((.....)))))------)))))..)))))).)))))---))) ( -25.50, z-score = -2.56, R) >droEre2.scaffold_4770 10622000 85 + 17746568 GGAAAACAGACAUUAGUUAAAGGUGCAAUCGUAAGCUGCC-------------AUCUGCGGUUUCUAUUUCGGGAA------UGUAUCACUCGUAUGUGUC---UAG .......((((((........((((((.(((.(((((((.-------------....)))))))......)))...------))))))........)))))---).. ( -18.49, z-score = -0.55, R) >consensus AGAAAAUAGACAUUAGUCAAAGGUGCAUAGGUAAUCUGCC_____________A__UGUGGUUUCUAUUUUGGGGAUAU_UGUGUAUUACUUGCUAGUGUCGU_UAG ........(((((((((....((((((((((((..((((..................))))(((((.....)))))))))))))))))....)))))))))...... (-12.79 = -15.39 + 2.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:43 2011