| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,464,758 – 14,464,899 |
| Length | 141 |
| Max. P | 0.950764 |
| Location | 14,464,758 – 14,464,899 |
|---|---|
| Length | 141 |
| Sequences | 6 |
| Columns | 156 |
| Reading direction | reverse |
| Mean pairwise identity | 70.37 |
| Shannon entropy | 0.52919 |
| G+C content | 0.41344 |
| Mean single sequence MFE | -25.97 |
| Consensus MFE | -18.48 |
| Energy contribution | -16.99 |
| Covariance contribution | -1.49 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.56 |
| SVM RNA-class probability | 0.950764 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14464758 141 - 27905053 ---------GAAAAAAGACUAAACCAAAAUAAAAAUUUGCUCAGACA-AUAAAAAGGCGAAAUUAAGCGACCGAAGCGAAGGCUAUGCGAA-----CCAAUCCGCCUUUAGCCGUCUUUUAACGUCUGCCUUCCGAUACACCACAUUUACCUUUUU ---------..((((((.......((((.......))))..(((((.-...(((((((........((.......))...(((((.(((..-----......)))...))))))))))))...)))))......................)))))) ( -26.00, z-score = -1.65, R) >dp4.chr2 19093142 130 + 30794189 GCAACAAGUAUAUACAUACCUGCAUAUACUAGGUAUAUGUAUGGAUACAAAAAGUAAUAAAAUUAAGAGACCAAGUCGAAGGCUGUGUGA----------UCCGCCUUC-GCCGUCGUCUG--GUCCGCUUUCUG-CGCU----GUUU-------- (((..(((((((((.(((((((.......))))))).)))))((((((.....))............((((...(.(((((((.(.....----------.).))))))-).)...)))).--))))))))..))-)...----....-------- ( -34.30, z-score = -1.67, R) >droEre2.scaffold_4770 10577585 122 + 17746568 -----------------------AGACAAC-CAACUAUGCUCAGACA-AUAAAAAGGCGAAAUUAAGCGACCGAAGCGAAGGCUAUGCGAA-----CCAAUCCGCCUUUGGCCGUCUUAUAACGUCUGCCUACCGAUACUU----UUUGCCUUUUU -----------------------.......-................-..((((((((((((.((((((.(((((((....)))..(((..-----......)))..)))).)).))))....(((........)))...)----))))))))))) ( -27.50, z-score = -1.32, R) >droYak2.chr3R 3109651 122 - 28832112 -----------------------AGACAAC-AAAAUAUACUCAGACA-AUAAAAAGGCGAAAUUAAGCGACCGAAACGAAGGCUAUGCGAGCAAAUCCA--CCGCCUUUAGCCGUCUUAUAACGUCUGCCUUCCGAUA-------CUUACCUUUUU -----------------------.......-..........(((((.-.......((((........)).)).....((.(((((.(((.(........--))))...))))).)).......)))))..........-------........... ( -20.60, z-score = -0.57, R) >droSec1.super_5 431126 141 + 5866729 ----------AAAAAAGACCAAACCAAAAC-AAAAUAUGCUCAGACA-AUAAAAAGGCGAAAUUAAGCGACCGAAGCGAAGGCUAUGCGAACCAAUCCAAUCCGCCUUUAGCCGUCUUUUAACGUCUGCCUUCCGAUACUU---ACUUAACUUUUU ----------.((((((............(-(.....))..(((((.-...(((((((........((.......))...(((((.(((.............)))...))))))))))))...))))).............---......)))))) ( -23.72, z-score = -1.03, R) >droSim1.chr3R 20495298 142 + 27517382 ---------AAAAAAAGACCAAACCAAAAC-AAAAUAUGCUCAGACA-AUAAAAAGGCGAAAUUAAGCGACCGAAGCGAAGGCUAUGCGAACCAAUCCAAUCCGCCUUUAGCCGUCUUUUAACGUCUGCCUUCCGAUACUU---ACUUAACUUUUU ---------..((((((............(-(.....))..(((((.-...(((((((........((.......))...(((((.(((.............)))...))))))))))))...))))).............---......)))))) ( -23.72, z-score = -1.04, R) >consensus __________AAAAAAGACCAAAACAAAAC_AAAAUAUGCUCAGACA_AUAAAAAGGCGAAAUUAAGCGACCGAAGCGAAGGCUAUGCGAA_____CCAAUCCGCCUUUAGCCGUCUUUUAACGUCUGCCUUCCGAUACUU___ACUUACCUUUUU .........................................(((((.......(((((........((.......))...(((((.(((.............)))...)))))))))).....)))))............................ (-18.48 = -16.99 + -1.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:41 2011