| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,450,617 – 14,450,713 |
| Length | 96 |
| Max. P | 0.563748 |
| Location | 14,450,617 – 14,450,713 |
|---|---|
| Length | 96 |
| Sequences | 12 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 73.94 |
| Shannon entropy | 0.51390 |
| G+C content | 0.39293 |
| Mean single sequence MFE | -13.16 |
| Consensus MFE | -8.73 |
| Energy contribution | -8.99 |
| Covariance contribution | 0.26 |
| Combinations/Pair | 1.07 |
| Mean z-score | -0.66 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.563748 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14450617 96 + 27905053 AUUUAUUCGUUGACAUGUGUCCUGCGUUUAUUU-GAAAUUGCAUUGUCAUUAUGCAAAUGCACUUUACCCCUGCAACCAUCUCUCUGCCGUUUUGUG------------------ ...((..(((.(((....)))..)))..))...-(((((.(((((((......)))).((((.........))))..........))).)))))...------------------ ( -12.80, z-score = 0.17, R) >droPer1.super_0 8793174 90 + 11822988 AUUUAUUCGUUGACAUGUGUCCUGCGUUUAUUC-CAAAUUGCAUUGUCAUUAUGCAAAUGCACUUUGCUGCACUCUUACCCU---AUUUUCUGC--------------------- ...((..(((.(((....)))..)))..))...-((((.((((((((......)).)))))).))))...............---.........--------------------- ( -13.10, z-score = -0.55, R) >dp4.chr2 19071937 90 - 30794189 AUUUAUUCGUUGACAUGUGUCCUGCGUUUAUUC-CAAAUUGCAUUGUCAUUAUGCAAAUGCACUUUGCUGCACUCUUACCCU---AUUUUAUGC--------------------- ...((..(((.(((....)))..)))..))...-((((.((((((((......)).)))))).))))...............---.........--------------------- ( -13.10, z-score = -0.31, R) >droEre2.scaffold_4770 10563033 92 - 17746568 AUUUAUUCGUUGACAUGUGUCCUGCGUUUAUUU-GAAAUUGCAUUGUCAUUAUGCAAAUGCACUUUCCCCU---UACCCCUUUUAC-CCGUUUUGCG------------------ ...((..(((.(((....)))..)))..))...-((((.((((((((......)).)))))).))))....---............-..........------------------ ( -13.50, z-score = -2.04, R) >droYak2.chr3R 3093688 90 + 28832112 AUUUAUUCGUUGACAUGUGUCCUGCGUUUAUUU-GAAAUUGCAUUGUCAUUAUGCAAAUGCAAAUGCACUU---A--CCUUUUACC-CUGUUUUGUG------------------ ........((.(((....)))..))((.(((((-(...((((((.......))))))...)))))).))..---.--.........-..........------------------ ( -14.10, z-score = -0.53, R) >droSec1.super_5 416958 95 - 5866729 AUUUAUUCGUUGACAUGUGUCCUGCGUUUAUUU-GAAAUUGCAUUGUCAUUAUGCAAAUGCACUUUACCCCGCCAACCCUCUUACC-UCGUUUUGUG------------------ ........((((.(..(((...((((((.....-.....(((((.......)))))))))))...)))...).)))).........-..........------------------ ( -11.00, z-score = -0.01, R) >droSim1.chr3R 20481067 95 - 27517382 AUUUAUUCGUUGACAUGUGUCCUGCGUUUAUUU-GAAAUUGCAUUGUCAUUAUGCAAAUGCACUUUACCCCGCCAACCCUCUUACC-CCGUUUUGUG------------------ ........((((.(..(((...((((((.....-.....(((((.......)))))))))))...)))...).)))).........-..........------------------ ( -11.00, z-score = -0.19, R) >droWil1.scaffold_181130 6113334 87 - 16660200 AUUUAUUCGUUGACAUGUGUCCUGCGUUUAUUUCAAAAUUGCAUUGUCAUUAUGCAAAUGCACUUUACCUUGCCAGCCUUU----GUCUCU------------------------ ........((((.((.(((...((((((...........(((((.......)))))))))))...)))..)).))))....----......------------------------ ( -13.20, z-score = -0.68, R) >droAna3.scaffold_13340 14029552 92 - 23697760 AUUUAUUCGUUGACAUGUGUCCUGCGUUUAUUU-CAAAUUGCAUUGUCAUUAUGCAAAUGCACUUUAUUGCCCUCUCGCCCCCACAUUUUCUG---------------------- ..............(((((....(((.......-....((((((.......))))))..(((......))).....)))...)))))......---------------------- ( -12.80, z-score = -1.25, R) >droGri2.scaffold_14906 7213418 114 - 14172833 AUUUAUUCGUUGACAUGUGUCCUCCGUUCAUUU-AAAAUUGCAUUGUCAUUAUGCAAAUGCACUUUACUCUCUCGGCCUGUCAAAAACUCUUUCGCCCGCUUCCACCCCGCUCAG .........((((((.(......(((......(-(((..((((((((......)).)))))).))))......)))).))))))............................... ( -12.10, z-score = 0.18, R) >droMoj3.scaffold_6540 25401259 90 - 34148556 AUUUAUUCGCUGACAUGUGUCCUGCGUUUAUUU-CAAAUUGCAUUGUCAUUAUGCAAAUGCACUUUACUCACCUGACGCCGCC--GUCCUGUG---------------------- ...((..(((.(((....)))..)))..))...-.(((.((((((((......)).)))))).)))...(((..((((....)--)))..)))---------------------- ( -17.60, z-score = -1.21, R) >droVir3.scaffold_12855 5770840 83 - 10161210 AUUUAUUCGUUGACAUGUGUCCAGCGUUUCAUU-CAAACUGCAUUUUCAUUAUGCAAAUGCACUUUGCUCU---CGACCUCUCUCUG---------------------------- .......(((((((....)).))))).......-((((.(((((((.(.....).))))))).))))....---.............---------------------------- ( -13.60, z-score = -1.54, R) >consensus AUUUAUUCGUUGACAUGUGUCCUGCGUUUAUUU_CAAAUUGCAUUGUCAUUAUGCAAAUGCACUUUACCCC_CCAACCCUCUCACAUCUGUUUU_____________________ ...((..(((.(((....)))..)))..))........((((((.......)))))).......................................................... ( -8.73 = -8.99 + 0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:39 2011