| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,450,156 – 14,450,265 |
| Length | 109 |
| Max. P | 0.500000 |
| Location | 14,450,156 – 14,450,265 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 76.27 |
| Shannon entropy | 0.44061 |
| G+C content | 0.53040 |
| Mean single sequence MFE | -36.13 |
| Consensus MFE | -22.18 |
| Energy contribution | -21.22 |
| Covariance contribution | -0.96 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 14450156 109 - 27905053 UGCGGGUGAGCCUAAUGAAGGAAGUAUUUGGUGUCUGCCGAUGGUGGAGUGCACAGCCAUGGACAUGGAGACAUGUUCACCCGGCACUUGCAGUUGCACCUGCACACCU ((((((((..(((.....))).........(((..((((((((((.(......).)))))(((((((....)))))))...)))))..))).....))))))))..... ( -41.40, z-score = -1.28, R) >droEre2.scaffold_4770 10562581 101 + 17746568 UGCGGGUGAGCCUAAUGAAGGAAGUAUUCGGUGUCUACCAAUGCCGGAGUGCACAGCUAUG--------GACAUGUUCACCCGGCACUUGCAGUUGCACCUGCACACCU ((((((((..(((.....)))..(((...(((....)))..((((((.(((.(((.(....--------)...))).)))))))))..))).....))))))))..... ( -34.90, z-score = -0.79, R) >droYak2.chr3R 3093239 101 - 28832112 UCCGGGUGAGCCUAAUGAAGGAAGUAUUCGGUGUCUGCCGAUGCCGGAGUACACAGCUAUG--------GACAUGUUCACCCGGCACUUCCAGUUGCACCUGCACACCU ...(((((...........((((((..(((((....))))).(((((.((..(((.(....--------)...)))..)))))))))))))...(((....)))))))) ( -35.40, z-score = -1.36, R) >droSec1.super_5 416502 107 + 5866729 UGCGGGUGAGCCUAAUGAAGGAAGUAUUUGGUGUCUGCCGAUGGUGGAGUGCACAGCCAUGGACAUG--GACAUGUUCACCCGGCACUUGCAGUUGCACCUGCACACCU ((((((((.(((.((((.......)))).)))..((((...((.(((.(((.(((.((((....)))--)...))).)))))).))...))))...))))))))..... ( -37.20, z-score = -0.11, R) >droSim1.chr3R 20480631 107 + 27517382 UGCGGGUGAGCCUAAUGAAGGAAGUAUUUGGUGUCUGCCGAUGGUGGAGUGCACAGCCAUGGACAUG--GACAUGUUCACCCGGCACUUGCAGUUGCACCUGCACACCU ((((((((.(((.((((.......)))).)))..((((...((.(((.(((.(((.((((....)))--)...))).)))))).))...))))...))))))))..... ( -37.20, z-score = -0.11, R) >droWil1.scaffold_181130 6113103 93 + 16660200 UUUAGAUGGGCC--AUAUGGCUAGCAGGAAGCAUACAUCGGAGGUG---UGUCCAAUAAAG--------GAAACAUU---UUAGUGUUUGCUUUGGCACACAUACACCU ....((((((((--....)))).((.....))...))))((..(((---(((((((...((--------.((((((.---...)))))).)))))).))))))...)). ( -30.70, z-score = -3.11, R) >consensus UGCGGGUGAGCCUAAUGAAGGAAGUAUUUGGUGUCUGCCGAUGGUGGAGUGCACAGCCAUG________GACAUGUUCACCCGGCACUUGCAGUUGCACCUGCACACCU ..(((((((((....((((.......))))((((...(((....)))...))))....................)))))))))(((..(((....)))..)))...... (-22.18 = -21.22 + -0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:38 2011