| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,440,521 – 14,440,594 |
| Length | 73 |
| Max. P | 0.988244 |
| Location | 14,440,521 – 14,440,594 |
|---|---|
| Length | 73 |
| Sequences | 7 |
| Columns | 74 |
| Reading direction | reverse |
| Mean pairwise identity | 78.82 |
| Shannon entropy | 0.38999 |
| G+C content | 0.29995 |
| Mean single sequence MFE | -8.71 |
| Consensus MFE | -7.73 |
| Energy contribution | -7.87 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.31 |
| SVM RNA-class probability | 0.988244 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14440521 73 - 27905053 -UAAACUGUGUGAAUAUUUUUCGCUUAUUACACGCAUUUUGUUAUUAUUAUUAUUAUUUAACCCCCCUGCCGUA -((((.((((((((((.........)))).)))))).))))................................. ( -8.10, z-score = -1.56, R) >droSim1.chr3R 20470415 68 + 27517382 -UAAACUGUGUGAAUAUUUUUCGCUUAUUACACGCAUUUUGUUAUUAUUAUUAUUAUUUAACCCCCCUC----- -((((.((((((((((.........)))).)))))).))))............................----- ( -8.10, z-score = -2.73, R) >droSec1.super_5 406841 68 + 5866729 -UAAACUGUGUGAAUAUUUUUCGCUUAUU-CACGCAUUUUGUUAUUAUUAUUAUUAUUUAACCCCCCCUA---- -((((.((((((((((.........))))-)))))).)))).............................---- ( -11.90, z-score = -5.35, R) >droYak2.chr3R 3082912 63 - 28832112 -UAAACUGUGUGAAUAUUUUUCGGUUAUUACACGCAUUUUGUUAUUAUUAUUUACCUCCCAGAC---------- -((((.((((((((((.........)))).)))))).)))).......................---------- ( -8.10, z-score = -0.92, R) >droEre2.scaffold_4770 10553199 63 + 17746568 -UAAACUGUGUGAAUAUUUUUCGGUUAUUACACGCAUUUUGUUAUUAUUAUUUACCCCCCAGAC---------- -((((.((((((((((.........)))).)))))).)))).......................---------- ( -8.10, z-score = -1.04, R) >droAna3.scaffold_13340 14019843 63 + 23697760 -UAAACUGUGUGAAUAUUUUUCGGUUAUUACACGCAUUUUGUUAUUAUUAUUUACCCCCUCCAU---------- -((((.((((((((((.........)))).)))))).)))).......................---------- ( -8.10, z-score = -1.51, R) >droPer1.super_0 8781828 69 - 11822988 UAAAACUGUGUGAAUAUUUUUCGGUUAUUACACGCAUUUUGUUAUUAUUUAAACCCUCUUCUGGCUGUC----- (((((.((((((((((.........)))).))))))))))).............((......)).....----- ( -8.60, z-score = -0.63, R) >consensus _UAAACUGUGUGAAUAUUUUUCGGUUAUUACACGCAUUUUGUUAUUAUUAUUAACCUCUAACACC_________ .((((.((((((((((.........)))).)))))).))))................................. ( -7.73 = -7.87 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:37 2011