| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,408,359 – 14,408,450 |
| Length | 91 |
| Max. P | 0.987474 |
| Location | 14,408,359 – 14,408,450 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 92.22 |
| Shannon entropy | 0.12481 |
| G+C content | 0.39768 |
| Mean single sequence MFE | -22.04 |
| Consensus MFE | -16.06 |
| Energy contribution | -16.25 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.15 |
| Mean z-score | -3.51 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.28 |
| SVM RNA-class probability | 0.987474 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14408359 91 - 27905053 GCGUGAUUCAGUUACCUAAUCACCUCACAAUCCAGCUAAUGGAUCCUCUCAUUAGCUCAGGUAAAUGAAUACGCAUAAAUAUCUCAUUCGC (((((.((((.((((((................(((((((((......))))))))).)))))).)))))))))................. ( -23.93, z-score = -4.82, R) >droSim1.chr3R 20442457 89 + 27517382 GCGUGAUUCAGUUACCUAAUCACCUCACAAUCCAGCUAAUGGAUCC--UCAUUAAGUCAGGUAGAUGAAUACGCAUAAAUAUCUCAUUCGC (((((.((((.((((((.((.........(((((.....)))))..--.......)).)))))).)))))))))................. ( -21.07, z-score = -3.18, R) >droSec1.super_5 379106 89 + 5866729 GCGUGAUUCAGUUACCUAAUCACCUCACAAUCCAGCUAAUGGAUCC--UCAUUAAGUUAGGUAGAUGAAUACGCAUAAAUAUCUCAUUCGC (((((.((((.(((((((((.........(((((.....)))))..--.......))))))))).)))))))))................. ( -24.97, z-score = -4.62, R) >droEre2.scaffold_4770 10520814 88 + 17746568 GAGUGAUUCGGUUACCUAAUCACCUCGCAAUAUAGCUAAUGGAUCC--ACAUUAAGUCAGGU-GAUGAAUACACAUAAAUAUCUCAUUCGC ..(((((((((...))..(((((((.((......))(((((.....--.)))))....))))-))))))).)))................. ( -18.20, z-score = -1.44, R) >consensus GCGUGAUUCAGUUACCUAAUCACCUCACAAUCCAGCUAAUGGAUCC__UCAUUAAGUCAGGUAGAUGAAUACGCAUAAAUAUCUCAUUCGC (((((.((((.((((((............(((((.....)))))..............)))))).)))))))))................. (-16.06 = -16.25 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:36 2011