| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,408,228 – 14,408,324 |
| Length | 96 |
| Max. P | 0.551170 |
| Location | 14,408,228 – 14,408,324 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 90.96 |
| Shannon entropy | 0.14526 |
| G+C content | 0.30780 |
| Mean single sequence MFE | -20.45 |
| Consensus MFE | -14.39 |
| Energy contribution | -16.45 |
| Covariance contribution | 2.06 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.551170 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14408228 96 - 27905053 UUUGCAAAUAUGCGACAGCCUUAAUAUAGAAGAAUCAGAUAAAUUACAAAAAUACACGUGAGUGUAUU--UAUAAAACGUCUCGAUGGAAAUGAAUUU .(((((....)))))..................(((((((...(((...((((((((....)))))))--).)))...)))).)))............ ( -16.30, z-score = -1.44, R) >droSim1.chr3R 20442324 98 + 27517382 UUUGCAAAUAUGCGACAGCCUUAAUAUAGAGGAAUCAGAUAUAUUUCAAAAAUACACGUAAGUGUAUUUAUAUAAAACGUCUCGAUGGAAAUGAAUUU .(((((....)))))...((((......))))....((((.((((((..((((((((....))))))))........(((....))))))))).)))) ( -20.70, z-score = -2.65, R) >droSec1.super_5 378973 98 + 5866729 UUUGCAAAUAUGCGACAGCCUUAAUAUAGAGGAAUCAGAUAUAUUUCAAAAAUACACGUGAGUGUAUUUAUAUAAAUCGUCUCGAUGGAAAUGAAUUU .(((((....)))))...((((......))))....((((.((((((..((((((((....))))))))......((((...)))).)))))).)))) ( -22.20, z-score = -2.56, R) >droEre2.scaffold_4770 10520687 95 + 17746568 UUUGCAAAUAUGCGACUGCCUUAAUAUAGAGGAAUCAGAUGAAUUUCAAAAAUACACGUGAGUGUAUU--UAUAAAGCCGCGCAGUGGAAA-GAGUUU (((.((....((((.(.((.(((.......((((((....).)))))..((((((((....)))))))--).))).)).))))).)).)))-...... ( -22.60, z-score = -2.26, R) >consensus UUUGCAAAUAUGCGACAGCCUUAAUAUAGAGGAAUCAGAUAAAUUUCAAAAAUACACGUGAGUGUAUU__UAUAAAACGUCUCGAUGGAAAUGAAUUU .(((((....)))))...((((......))))....((((.((((((..((((((((....))))))))........(((....))))))))).)))) (-14.39 = -16.45 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:35 2011