| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,398,758 – 14,398,849 |
| Length | 91 |
| Max. P | 0.547975 |
| Location | 14,398,758 – 14,398,849 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 68.78 |
| Shannon entropy | 0.60474 |
| G+C content | 0.47639 |
| Mean single sequence MFE | -15.36 |
| Consensus MFE | -6.04 |
| Energy contribution | -5.70 |
| Covariance contribution | -0.34 |
| Combinations/Pair | 1.64 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.547975 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 14398758 91 - 27905053 CCAAAAUUCAGCUGCCGCA--CGAUCCGUUCUC--AUCGUUUCGGUGUUCCCUUCCGCUGUUCC----CCGUUUGUUUACCAUCUGUACCCAAAAAGCU--- .........((((((((.(--((((........--)))))..))))..................----...((((..(((.....)))..)))).))))--- ( -14.00, z-score = -1.30, R) >droAna3.scaffold_13340 13984731 99 + 23697760 --AAAAUUCACUCAGUGCGACCAUUUCAAGUUCGUUCCGUUUCAGU-UUCGUUCCCACUGUUUCUAUUCUCAUUGUUUACCAUCUGUAUCCAAAAAGCUAGU --..........(((((.((............((...)).......-.....)).)))))...(((..((..(((..(((.....)))..)))..)).))). ( -7.15, z-score = 0.20, R) >droEre2.scaffold_4770 10511151 89 + 17746568 CAAAAAUUCAGCU---GCA--CGGUCCGUUCUC-UUUCGUUUCAGCGUUCCCUUCCGCUGUUUC----CCGUUUGUUUACCAUCUGUAUCCAAAAAGCU--- .........((((---..(--(((..((.....-...))...(((((........)))))....----))))(((..(((.....)))..)))..))))--- ( -15.10, z-score = -2.63, R) >droYak2.chr3R 3055181 92 - 28832112 CAAAAAUUCAGCUGCCGCA--CGGUCCGUUCUC-UUUCGUUUCAGCGUUCCCUUUCGCUGUUCC----CCGUUUGUUUACCAUCUGUAUCCAAAAAGCU--- .........((((.....(--(((..((.....-...))...(((((........)))))....----))))(((..(((.....)))..)))..))))--- ( -15.60, z-score = -2.19, R) >droSec1.super_5 369528 91 + 5866729 GCAAAAUUCAGCUGCCGCA--CGGUCCGUUCUC--UUCGUUUCGGUGUUCGCUUCCGCUGUUCC----CCGUUUGUUUAUCAUCUGUAUCCAAAAAGCU--- ((......((((.((.(((--(((..((.....--..))..)).))))..))....))))....----...((((..(((.....)))..))))..)).--- ( -15.10, z-score = -0.56, R) >droSim1.chr3R 20430181 91 + 27517382 GCAAAAUUCAGCUGCCGCA--CGGUCCGUUCUC--UUCGUUUCGGUGUUCGCUUCCGCUGUUCC----CCGUUUGUUUACCAUCUGUAUCCAAAAAGCU--- ((......((((.((.(((--(((..((.....--..))..)).))))..))....))))....----...((((..(((.....)))..))))..)).--- ( -16.70, z-score = -1.02, R) >apiMel3.GroupUn 172197478 77 - 399230636 -------------GAAAUACUGGCCUGGCUUUCGACCCG---CAAGUUUCCGUCCAAGGGCCA-----CCGUGUGUACA-CAUUUGUGUAUUCACAGAU--- -------------.......((((((.......((..(.---...)..)).......))))))-----..(((.(((((-(....)))))).)))....--- ( -23.84, z-score = -1.99, R) >consensus CCAAAAUUCAGCUGCCGCA__CGGUCCGUUCUC__UUCGUUUCAGUGUUCCCUUCCGCUGUUCC____CCGUUUGUUUACCAUCUGUAUCCAAAAAGCU___ ................((........................(((((........)))))...........((((..(((.....)))..))))..)).... ( -6.04 = -5.70 + -0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:34 2011