| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,384,357 – 14,384,469 |
| Length | 112 |
| Max. P | 0.995553 |
| Location | 14,384,357 – 14,384,469 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 86.21 |
| Shannon entropy | 0.22549 |
| G+C content | 0.41792 |
| Mean single sequence MFE | -16.41 |
| Consensus MFE | -14.64 |
| Energy contribution | -14.70 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.90 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.82 |
| SVM RNA-class probability | 0.995553 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14384357 112 - 27905053 UCCCCAAAUAGUUCAUCCCCCCAUUCACCAUUCCUCAUU-CCUCAUCCAAUUGCGAUCUCGACAACGAGUUGUACCAACAGCUUUAUUGCAUUUAUUUGGCACUUUAUUACCG ...((((((((............................-...........(((((.((((....)))))))))......((......))..))))))))............. ( -15.70, z-score = -3.06, R) >droYak2.chr3R 3039815 109 - 28832112 UCCCCAAAUAAUACAAGUAGUAGUUCAU----CCCCAUUCCCCCUUCCAAUUGCGAGUUCGACAACGACUUGUACCAACAGCUUUAUUGCAUUUAUUUGGCACUUUAUUACCG ...(((((((((((((((.((.(((...----(.(((..............)).).)...))).)).)))))))......((......))..))))))))............. ( -16.94, z-score = -2.60, R) >droSec1.super_5 355182 102 + 5866729 UCCCCAAAUAGUUCAUAC---UAUUCAC-------CAUU-CCUCAUCCAAUUGCGAUCUCGACAACGAGUUGUACCAACAGCUUUAUUGCAUUUAUUUGGCACUUUAUUACCG ...((((((((.......---.......-------....-...........(((((.((((....)))))))))......((......))..))))))))............. ( -15.70, z-score = -2.70, R) >droSim1.chr3R 20421218 105 + 27517382 UCCCCAAAUAGUUCAUACCCCCCUUCGC-------CAUU-CCUCAUCCAAUUGCGAUCUCGACAACGAGUUGUACCAACAGCUUUAUUGCAUUUAUUUGGCACUUUAUUACCG ...((((((((((..(((......((((-------.(((-........))).)))).((((....))))..)))..))).((......))...)))))))............. ( -17.30, z-score = -3.26, R) >consensus UCCCCAAAUAGUUCAUACCCCCAUUCAC_______CAUU_CCUCAUCCAAUUGCGAUCUCGACAACGAGUUGUACCAACAGCUUUAUUGCAUUUAUUUGGCACUUUAUUACCG ...((((((((........................................(((((.((((....)))))))))......((......))..))))))))............. (-14.64 = -14.70 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:32 2011