| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,376,112 – 14,376,227 |
| Length | 115 |
| Max. P | 0.767379 |
| Location | 14,376,112 – 14,376,227 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 83.48 |
| Shannon entropy | 0.31120 |
| G+C content | 0.58908 |
| Mean single sequence MFE | -44.84 |
| Consensus MFE | -24.89 |
| Energy contribution | -25.95 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.767379 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14376112 115 - 27905053 CUCGCAUUACAGGCGACGACGGCCAAAUGAGUUGUCGUCCCUGGGUGAAGAUGACGAGGCUGACGUGGAUUUGGUUGUGGAUGCCGCAUGUGGCUGGCCCGUGGUGAUGUGAGUG ((((((((((.((((.(.((((((((((....(((((..(((.(..........).))).)))))...)))))))))).).)))).((((.((....)))))))))))))))).. ( -48.20, z-score = -3.10, R) >droAna3.scaffold_13340 13963214 93 + 23697760 GUCGCAUUACAGGCGGCGACGGCCAAAUGA---GUCCUCCCAGGAUGAAGAUGUCGAGGCAGCC------GUGGAUGCGAAUGCCGAAUGUGGAUG-UGAGUG------------ .((((((((((..(((((.((((.......---((((.....))))......))))..(((.(.------...).)))...)))))..))).))))-)))...------------ ( -31.52, z-score = -0.95, R) >droEre2.scaffold_4770 10488796 109 + 17746568 CUCGCAUUACAGGCGACGACAGCCAAAUGAGUCGUCGUCCCUGGCUGAAGAUGUCGAGGCUGGC------GGGGAUGUGGAUGCCGCAUGUGGCUGCCCCAUGGUGCUGUGAGUG ((((((((.((((.((((((.(((....).)).))))))))))......)))).))))(((.((------((.(..((((..((((....))))....))))..).)))).))). ( -43.00, z-score = -0.65, R) >droYak2.chr3R 3030956 115 - 28832112 CUCGCAUUACAGGCGACGACAGCCAAAUGAGUCGUCGCCCCUGGAUAAAGAUGUCGAGGCUGACGUGGAUGUGGAUGUGGAUGCCGCAUGUGGCUGCCCCAUGGUGCUGUGAGUG ((((((.(((.(((((((((..........)))))))))(((.((((....)))).)))....(((((..(..(((((((...))))))....)..).)))))))).)))))).. ( -45.40, z-score = -2.04, R) >droSec1.super_5 346826 115 + 5866729 CUCGCAUUACAGGCGACGACGGCCAAAUGAGUCGUCGUCCCUGGAUGAAGAUGACGAGGCUGACGUGGAUUUCGAUGUGGAUGCCGCAUGUGGCUGCCCCGUGGUGAUGUGAGUG ((((((((.((((.((((((((((....).))))))))))))).......((.(((.((((.((((.(....).)))).)..((((....)))).))).))).)))))))))).. ( -50.30, z-score = -3.65, R) >droSim1.chr3R 20412979 115 + 27517382 CUCGCAUUACAGGCGACGACGGCCAAAUGAGUCGUCGUCCCUGGAUGAAGAUGACGAGGCUGGCGUGGAUUUCGAUGUGGAUGCCGCAUGUGGCUGCCCCGUGGUGAUGUGAGUG ((((((((.((((.((((((((((....).))))))))))))).......((.(((.((((.((((.(....).)))).)..((((....)))).))).))).)))))))))).. ( -50.60, z-score = -3.30, R) >consensus CUCGCAUUACAGGCGACGACGGCCAAAUGAGUCGUCGUCCCUGGAUGAAGAUGACGAGGCUGACGUGGAUGUGGAUGUGGAUGCCGCAUGUGGCUGCCCCGUGGUGAUGUGAGUG ((((((((.((((.((((((.(((....).)).))))))))))......)))).))))................(((.((..((((....))))...)))))............. (-24.89 = -25.95 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:32 2011