| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,901,857 – 7,901,948 |
| Length | 91 |
| Max. P | 0.545585 |
| Location | 7,901,857 – 7,901,948 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 88.93 |
| Shannon entropy | 0.14841 |
| G+C content | 0.51634 |
| Mean single sequence MFE | -26.56 |
| Consensus MFE | -24.21 |
| Energy contribution | -23.77 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.545585 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7901857 91 + 23011544 GACUUGGACUUAAACUUGGACGCGGACGUGGACAUGGACAAUUUGCUCCACGCCGCCGUUGCAACUGCUGCAUAGCCAUUAUCAUCUGUCC-------- .....((((.......(((.(((((.((((((((.........)).)))))))))).((.((....)).))...)))).........))))-------- ( -27.29, z-score = -1.94, R) >droSim1.chr2L 7698206 91 + 22036055 GACUUGGACUUAAACUUGGACGUGGACGUGGACAUGGACAAUUUGCUCCACGCCGCCGUUGCAACUGCUGCAUAGCCAUUAUCAUCUGUCC-------- .....((((.......(((.(((((.((((((((.........)).)))))))))).((.((....)).))...)))).........))))-------- ( -25.39, z-score = -1.25, R) >droEre2.scaffold_4929 16823899 99 + 26641161 GACUUAAACUUGGAUUUGGACGUGGAUGUGGACAUGGUCAAUUUGCUCCACGCCGCCGUUGCAACUGCUGCAUAGCCAUUAUCAUCUGUCCCGAGUCGA (((((..((...(((.(((.(((((.((((((((.........)).)))))))))).((.((....)).))...))))..)))....))...))))).. ( -27.00, z-score = -0.27, R) >consensus GACUUGGACUUAAACUUGGACGUGGACGUGGACAUGGACAAUUUGCUCCACGCCGCCGUUGCAACUGCUGCAUAGCCAUUAUCAUCUGUCC________ .................((((((((.((((((((.........)).)))))))))).((.((....)).))................))))........ (-24.21 = -23.77 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:24:39 2011