| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,353,493 – 14,353,548 |
| Length | 55 |
| Max. P | 0.998756 |
| Location | 14,353,493 – 14,353,548 |
|---|---|
| Length | 55 |
| Sequences | 3 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 98.78 |
| Shannon entropy | 0.01670 |
| G+C content | 0.38653 |
| Mean single sequence MFE | -17.60 |
| Consensus MFE | -17.60 |
| Energy contribution | -17.60 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.37 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.13 |
| SVM RNA-class probability | 0.997559 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14353493 55 + 27905053 GGAUAUAUAUCUCGAGGAUAUAUAUCUCGGGGAUAUAUAUCUUUUUCGGGUGCAC (((((((((((((..((((....))))..)))))))))))))............. ( -17.60, z-score = -3.42, R) >droSec1.super_5 324301 54 - 5866729 GGAUAUAUAUCUCGAGGAUAUAUAUCUCGGGGAUAUAUAUCUUUU-CGGGUGCAC (((((((((((((..((((....))))..)))))))))))))...-......... ( -17.60, z-score = -3.34, R) >droSim1.chr3R 20391348 54 - 27517382 GGAUAUAUAUCUCGAGGAUAUAUAUCUCGGGGAUAUAUAUCUUUU-CGGGUGCAC (((((((((((((..((((....))))..)))))))))))))...-......... ( -17.60, z-score = -3.34, R) >consensus GGAUAUAUAUCUCGAGGAUAUAUAUCUCGGGGAUAUAUAUCUUUU_CGGGUGCAC (((((((((((((..((((....))))..)))))))))))))............. (-17.60 = -17.60 + -0.00)
| Location | 14,353,493 – 14,353,548 |
|---|---|
| Length | 55 |
| Sequences | 3 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 98.78 |
| Shannon entropy | 0.01670 |
| G+C content | 0.38653 |
| Mean single sequence MFE | -14.40 |
| Consensus MFE | -14.40 |
| Energy contribution | -14.40 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -4.56 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.48 |
| SVM RNA-class probability | 0.998756 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14353493 55 - 27905053 GUGCACCCGAAAAAGAUAUAUAUCCCCGAGAUAUAUAUCCUCGAGAUAUAUAUCC ..............((((((((((..((((.........)))).)))))))))). ( -14.40, z-score = -4.75, R) >droSec1.super_5 324301 54 + 5866729 GUGCACCCG-AAAAGAUAUAUAUCCCCGAGAUAUAUAUCCUCGAGAUAUAUAUCC .........-....((((((((((..((((.........)))).)))))))))). ( -14.40, z-score = -4.47, R) >droSim1.chr3R 20391348 54 + 27517382 GUGCACCCG-AAAAGAUAUAUAUCCCCGAGAUAUAUAUCCUCGAGAUAUAUAUCC .........-....((((((((((..((((.........)))).)))))))))). ( -14.40, z-score = -4.47, R) >consensus GUGCACCCG_AAAAGAUAUAUAUCCCCGAGAUAUAUAUCCUCGAGAUAUAUAUCC ..............((((((((((..((((.........)))).)))))))))). (-14.40 = -14.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:31 2011