| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,349,751 – 14,349,862 |
| Length | 111 |
| Max. P | 0.962497 |
| Location | 14,349,751 – 14,349,862 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 72.21 |
| Shannon entropy | 0.46527 |
| G+C content | 0.59068 |
| Mean single sequence MFE | -16.54 |
| Consensus MFE | -13.98 |
| Energy contribution | -14.02 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.71 |
| SVM RNA-class probability | 0.962497 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14349751 111 - 27905053 CCAGCGGCGUUCGUUCCGCUAGCGUUGUCGACAUCCACGAGUUAGCAAUGUCACUUUCUCUCCCGUACCUUUCUCCUUUCCCCCCAAGCCCCCC-----UUUCAGCCACGCCCCCU .....(((((.......((((((.((((.(....).)))))))))).........................................((.....-----.....)).))))).... ( -17.10, z-score = -1.32, R) >droSim1.chr3R 20387638 108 + 27517382 CCAGCGGCGUUCGUUCCGCCAGCGUUGUCGACAUCCACGAGUUAGCAAUGUCACUUUCUCUCCC-UACCUUUCUCCUUUCCCCCAACCCCCAC-------UUCAGCCACGCCCCCU ...((((((.......)))).(((((((..((........))..))))))).............-............................-------.........))..... ( -17.30, z-score = -2.16, R) >droYak2.chr3R 2994366 91 - 28832112 CCAGCGGCGUUCGUUCCGCCCGCGUUGUCGACAUCCACGAGUUAGCAAUGUCACUU--UCUCUC-UCCACCCUUCUUUUUCAGCCACGCCCCUU---------------------- ...((((((.......)))).(((((((..((........))..))))))).....--......-......................)).....---------------------- ( -16.40, z-score = -1.32, R) >droEre2.scaffold_4770 10463097 113 + 17746568 CCAGCGGCCUCCGUUCCGCCAGCGUUGUCGACAUCCACGAGUUAGCAAUGUCACUU--UCUCCC-UACCUUUCUCCUUUCUCCCUGCUCCACCCGCCCUUUUCCGCCACGCCCCUU ..((((((.........))).(((((((..((........))..))))))).....--......-....................)))............................ ( -15.00, z-score = -0.48, R) >droAna3.scaffold_13340 13941151 86 + 23697760 CCAGAGGCGCUCGUUCCGCCAGCGUUGUCGACAUCCACGAGUUAGCAAUGUCACUU--UCCCCGGUUCCUACCCAUUUUCCACCCCCG---------------------------- .....((((.......)))).(((((((..((........))..))))))).....--.....(((....)))...............---------------------------- ( -16.90, z-score = -1.39, R) >consensus CCAGCGGCGUUCGUUCCGCCAGCGUUGUCGACAUCCACGAGUUAGCAAUGUCACUU__UCUCCC_UACCUUUCUCCUUUCCCCCCACGCCCCC_______UUC_GCCACGCCCC_U .....((((.......)))).(((((((..((........))..)))))))................................................................. (-13.98 = -14.02 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:29 2011