| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,348,386 – 14,348,486 |
| Length | 100 |
| Max. P | 0.916961 |
| Location | 14,348,386 – 14,348,486 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 75.16 |
| Shannon entropy | 0.42732 |
| G+C content | 0.48927 |
| Mean single sequence MFE | -17.06 |
| Consensus MFE | -14.24 |
| Energy contribution | -13.38 |
| Covariance contribution | -0.86 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.916961 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14348386 100 - 27905053 AUUGGGAGCUGUCAAUGCAGAAGCCGCUUGACGUGUUAAUUCGCCAGCUGACACGCACAAUCCAAAACACACACAAUAAACACACAUCCUUCCAGCACAC .(((((((..(((((.((.......)))))))(((((.........((......)).........)))))..................)))))))..... ( -18.87, z-score = -0.34, R) >droEre2.scaffold_4770 10461710 85 + 17746568 AUUGGAACCUGUCAAUGCAGAAGCCGCUUGACGUGUUAAUUCGCCAGCUGACACGCACAAUCCA-------------AAACACACAUCCUUCCAGCAC-- .(((((....(((((.((.......)))))))((((((..........))))))......))))-------------)....................-- ( -16.70, z-score = -0.55, R) >droAna3.scaffold_13340 13939847 81 + 23697760 AUUUGGACCUGUCAAUGCAGAAGCCGCUUGACGUGUUAAUUCGCCAGCUGACACACACACUG---------------ACACACUCAUCGAUAAGAC---- ..(..(....(((((.((.......)))))))((((((..........)))))).....)..---------------)..................---- ( -12.10, z-score = 1.18, R) >dp4.chr2 18950393 92 + 30794189 AUUUGGACCUGUCAAUGCAGACCCCGCUUGACGUGUUAAUACGCAAGCUGACACACCCAUACCUACACAUACCC---AAACCCAUACCGAUACCC----- .(((((....(((((.((.......)))))))((((((...(....).))))))..................))---)))...............----- ( -17.90, z-score = -3.44, R) >droPer1.super_0 8666920 88 - 11822988 AUUUGGACCUGUCAAUGCAGACCCCGCUUGACGUGUUAAUACGCAAGCUGACACACCCAUACCU----AUACCC---AAACCCAUACCGAUACCC----- .(((((....(((((.((.......)))))))((((((...(....).))))))..........----....))---)))...............----- ( -17.90, z-score = -3.72, R) >droSim1.chr3R 20386325 100 + 27517382 AUUGGGAGCUGUCAAUGCAGAAGCCGCUUGACGUGUUAAUUCGCCAGCUGACACGCACAAUCCAAAACACACACAAUAAACACACAUCCUUCCAGCACAC .(((((((..(((((.((.......)))))))(((((.........((......)).........)))))..................)))))))..... ( -18.87, z-score = -0.34, R) >consensus AUUGGGACCUGUCAAUGCAGAAGCCGCUUGACGUGUUAAUUCGCCAGCUGACACACACAAUCCA____A_AC_C___AAACACACAUCCAUACAGC____ ...(((....(((((.((.......)))))))((((((...(....).))))))................................)))........... (-14.24 = -13.38 + -0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:28 2011