| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,339,610 – 14,339,705 |
| Length | 95 |
| Max. P | 0.919107 |
| Location | 14,339,610 – 14,339,705 |
|---|---|
| Length | 95 |
| Sequences | 12 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 74.34 |
| Shannon entropy | 0.50273 |
| G+C content | 0.39303 |
| Mean single sequence MFE | -18.10 |
| Consensus MFE | -11.51 |
| Energy contribution | -11.19 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.27 |
| SVM RNA-class probability | 0.919107 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14339610 95 - 27905053 --------AGUUUAUGCCUAAACACUACUAGU-AGCCCUAAGUCC-UAGGCAUAAAC-CGAGCACCACGGCGA---GAUAUGCACCCAUGUAAAAUGCAGAAAUUAAUU- --------.(((((((((((...(((..(((.-....))))))..-)))))))))))-...........(((.---.(((((....)))))....)))...........- ( -19.10, z-score = -1.33, R) >droSim1.chr3R 20377254 95 + 27517382 --------AGUUUAUGCCUAAACACUACUAGU-AGCCCUAAGUCC-UAGGCAUAGAC-CGAGCACCACGGCGA---GAUAUGCACCCAUGUAAAAUGCAGAAAUUAAUU- --------.(((((((((((...(((..(((.-....))))))..-)))))))))))-...........(((.---.(((((....)))))....)))...........- ( -19.20, z-score = -1.17, R) >droSec1.super_5 310355 95 + 5866729 --------AGUUUAUGCCUAAACACUACUAGU-AGCCCUAAGUCC-UAGGCAUAGAC-CGAGCACCACGGCGA---GAUAUGCACCCAUGUAAAAUGCAGAAAUUAAUU- --------.(((((((((((...(((..(((.-....))))))..-)))))))))))-...........(((.---.(((((....)))))....)))...........- ( -19.20, z-score = -1.17, R) >droYak2.chr3R 2983921 103 - 28832112 AGUUAAAUAGUUUAUGCCUAACCACUACUAGC-AGCUCUAAGUCC-UAGGCAUAGAC-CGAGCACCAUGGCGA---GAUAUGCACCCUUGUAAAAUGCAGAAAUUAAUU- ((((((...(((((((((((...(((..(((.-....))))))..-)))))))))))-...(((.....((((---(.........)))))....))).....))))))- ( -22.00, z-score = -1.00, R) >droEre2.scaffold_4770 10453012 103 + 17746568 AGUUAGAUAGUUUAUGCCUAACCACUACUAGU-AGCCCUAAGUCC-UAGGCAUAGAC-CGAGCACCACGGCGA---GAUAUGCACCCAUGUAAAAUGCAGAAAAUUAUU- .(((.....(((((((((((...(((..(((.-....))))))..-)))))))))))-..)))......(((.---.(((((....)))))....)))...........- ( -19.90, z-score = -0.78, R) >droAna3.scaffold_13340 13932327 98 + 23697760 --------AGUUUAUGCCUAACCACUAUUAGU-AGCCCUAAGUCC-UAGGCAUAAAC-CGAGCACCACGGCGAUAGGAUAUGCACCCAUGUAAAAUGCAAAAAUUAUAU- --------.(((((((((((...(((..(((.-....))))))..-)))))))))))-...(((((.........))(((((....)))))....)))...........- ( -19.60, z-score = -0.90, R) >dp4.chr2 18941623 93 + 30794189 --------AGUUUAUGCCUAAUCACUAUUAGU-AGUCCUAAGCCCAUAGGCAUAGAC-CGAGCACCA-GGC-----GAGAUGCA-CCAUGUAAAAUGCAAAAAUUUAACU --------.(((((((((((.......((((.-....)))).....)))))))))))-...(((...-.((-----(.(.....-.).)))....)))............ ( -19.10, z-score = -1.36, R) >droPer1.super_0 8656656 93 - 11822988 --------AGUUUACGCCUAAUCACUAUUAGU-AGUCCUAAGCCCAUAGGCAUAGAC-CGAGCACCA-GGC-----GAGAUGCA-CCAUGUAAAAUGCAAAAAUUUAACU --------......(((((....((((....)-))).(((.(((....))).)))..-........)-)))-----)...((((-..........))))........... ( -16.80, z-score = -0.67, R) >droWil1.scaffold_181130 5985019 92 + 16660200 --------AGUUAUUACUUACAAAAUAAU----AAUCAUAAUGCC-UAAUCACAAAUAUGUAUACUUAAUCCC---ACAAUGCA-CCAUGUAAAAUGCAAAAACUUUCU- --------.((((((........))))))----........(((.-.....(((....(((((..........---...)))))-...))).....)))..........- ( -3.92, z-score = 0.91, R) >droVir3.scaffold_12855 5638258 89 + 10161210 --------AGUUUAUGCCUAACAACUACUAGUCAAUCCUAAGUCC-UAGGCAUAGACACGCGCACCU---------AAUGAGCA-CAUUGUAAAAUGCAAAAUUUUAA-- --------.(((((((((((...(((..(((......))))))..-)))))))))))..((.((...---------..)).)).-.....((((((.....)))))).-- ( -19.90, z-score = -2.70, R) >droMoj3.scaffold_6540 25266556 85 + 34148556 ---------GUUUAUGCCCAUCAACUAUUAUC-AAUCCCAAGUCC-UGGGCAUAAG--CACGCACCU---------AACGAGCA-CAUUGUAAAAUGCAAAAUUUUAA-- ---------(((((((((((...(((......-.......)))..-))))))))))--)..(((...---------.((((...-..))))....)))..........-- ( -20.82, z-score = -3.73, R) >droGri2.scaffold_14906 7109377 85 + 14172833 ---------GUUUAUGCCUACUAACUAUUAGA-AAUCCAAAGUCC-UAGGCAUAAG--CACGCACCU---------AAUGAGCA-CAUUGUAAAAUGCAAAAUUUUAA-- ---------(((((((((((...(((......-.......)))..-))))))))))--)..(((..(---------((((....-))))).....)))..........-- ( -17.62, z-score = -2.42, R) >consensus ________AGUUUAUGCCUAACCACUACUAGU_AGCCCUAAGUCC_UAGGCAUAGAC_CGAGCACCA_GGCGA___GAUAUGCA_CCAUGUAAAAUGCAAAAAUUUAAU_ .........(((((((((((....((..............))....)))))))))))........................(((...........)))............ (-11.51 = -11.19 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:25 2011