| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,326,826 – 14,326,928 |
| Length | 102 |
| Max. P | 0.763246 |
| Location | 14,326,826 – 14,326,928 |
|---|---|
| Length | 102 |
| Sequences | 7 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 63.99 |
| Shannon entropy | 0.68424 |
| G+C content | 0.52577 |
| Mean single sequence MFE | -33.14 |
| Consensus MFE | -13.32 |
| Energy contribution | -14.19 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.65 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.763246 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14326826 102 - 27905053 AUUGUUCUGAUUUCGGCGGCGG-AAAAAGAUGCCGCGGAAGAAGU-----CAGCGCUGUUCACUUGAGUGGAUUAUAAUUUCCGCAA-------UGGCCAAUGGUCGUUAGGGGC ...((.((((((((.((((((.-.......))))))....)))))-----))).)).((((......(((((........)))))((-------(((((...)))))))..)))) ( -35.90, z-score = -2.12, R) >droSim1.chr3R 20364229 112 + 27517382 AUUGUUCUGAUUUCGGCGGCGG---AAAGAUGCCGCGGAAGAAGGCAGCGCAGCGCAGUUCAUCUGAGUGGAUUAUAAUUUCCGCAAUGGCCGAUGGCCAAUGGUCGUUAGGGGC ...(((((..((((.((((((.---.....)))))).))))..(((.(((...)))...........(((((........)))))....)))(((((((...))))))).))))) ( -38.30, z-score = -0.49, R) >droSec1.super_5 297653 112 + 5866729 AUUGUUCUGAUUUCGGCGGCAG---AAAGAUGCCGCGGAAGAAGGCAGCGCAGCGCAGUUCAUCUGAGUGGAUUAUAAUUUCCGCAAUGGCCGAUGGCCAAUGGUCGUUAGGGGC ...(((((..((((.((((((.---.....)))))).))))..(((.(((...)))...........(((((........)))))....)))(((((((...))))))).))))) ( -39.20, z-score = -1.02, R) >droYak2.chr3R 2970178 105 - 28832112 AUUGUUCUGAUUUCGGCGGCGGCGGAAAGAAGCUGUAAGG----------CAGCGCAGUUCACCUGAGUGGAUUAUAAUUUCCGCAAUGGCCAAUGACCAAUGGUCGUUAGGAGC ...(((((......(((.(..(((((((...((((.....----------))))..(((((((....)))))))....)))))))..).)))(((((((...))))))).))))) ( -39.20, z-score = -2.78, R) >droEre2.scaffold_4770 10434826 102 + 17746568 AUUGUUCUGAUUUCGGCGGCGG---GAAGCAGCUGAGAGG----------CAGCGCAAUGCACUUGAGUGGAUUAUAAUUUCCGCAGUGGCCAAUGACCAGUGGUCGUUAGGAGC (((((.(((.(((((((.((..---...)).)))))))..----------))).))))).((((...(((((........))))))))).(((((((((...))))))).))... ( -37.60, z-score = -2.12, R) >droAna3.scaffold_13340 13917607 82 + 23697760 AUUGUUCCGA--UGGAGGGCAG------GAUGUGCCUGAG----------CGGCA----UCGCCUGAAUGGAUUAUAAUUUCCGGCG-------UGGCCA----UCGCUGGGGGC .....(((..--....)))(((------(..(((((....----------.))))----)..))))............(..((((((-------......----.))))))..). ( -27.20, z-score = 0.41, R) >droPer1.super_0 8642743 77 - 11822988 ----------AUCAAGGGGCAGAGAGAGAGUGGAGUGGAGU---------------------GCUGAGUGGAUUAUAAUUUCUGCAC-------AGACAACACAUCAGGAAAGGC ----------....................((..(((..((---------------------.(((.(..((........))..).)-------))))..)))..))........ ( -14.60, z-score = -0.41, R) >consensus AUUGUUCUGAUUUCGGCGGCGG___AAAGAUGCCGCGGAG__________CAGCGCAGUUCACCUGAGUGGAUUAUAAUUUCCGCAAUGGCC_AUGGCCAAUGGUCGUUAGGGGC ...(((((..(((((.(((((.........))))))))))...........(((.............(((((........)))))..........(((.....)))))).))))) (-13.32 = -14.19 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:24 2011