| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,326,619 – 14,326,688 |
| Length | 69 |
| Max. P | 0.975544 |
| Location | 14,326,619 – 14,326,688 |
|---|---|
| Length | 69 |
| Sequences | 6 |
| Columns | 77 |
| Reading direction | forward |
| Mean pairwise identity | 83.10 |
| Shannon entropy | 0.31109 |
| G+C content | 0.52133 |
| Mean single sequence MFE | -24.62 |
| Consensus MFE | -22.67 |
| Energy contribution | -22.12 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.93 |
| SVM RNA-class probability | 0.975544 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14326619 69 + 27905053 UCAGCUGCACUUGUUGUUCUCGUUCAGUCGGCGAGUGUAUCUGCGAGUGUGCAUCUGCACAUCCGAACA-------- .(((.(((((((((((..((.....)).))))))))))).)))((..(((((....)))))..))....-------- ( -26.30, z-score = -2.45, R) >droAna3.scaffold_13340 13917389 71 - 23697760 CCAGCUGCACUUGUUGUUCUCGUUCACUCACCGCGAGCAUCUGUAUCUGUAUCUGCAUCGGUUUGAGUGCA------ ......((((((..(((((.((.........)).)))))..((((........)))).......)))))).------ ( -14.00, z-score = 0.95, R) >droEre2.scaffold_4770 10434587 69 - 17746568 UCAGCUGCACUUGUUGUUCUCGUUCAGGCGGCGAGUGUAUCUGCGAGUGUGCAUCUGCACAUCCGAACA-------- .(((.(((((((((((((........))))))))))))).)))((..(((((....)))))..))....-------- ( -28.50, z-score = -2.69, R) >droYak2.chr3R 2969975 69 + 28832112 UCAGCUGCACUUGUUGUUCUCGUUCAGUCGGCGAGUGUAUCUGCGAGUGUGCAUCUGCACAUCCGAACA-------- .(((.(((((((((((..((.....)).))))))))))).)))((..(((((....)))))..))....-------- ( -26.30, z-score = -2.45, R) >droSec1.super_5 297441 77 - 5866729 UCAGCUGCACUUGUUGUUCUCGUUCAGUCGGCGAGUGUAUCUGCGAGUGUGCAUCUGCACAUCCGAACAUCCGAACA .(((.(((((((((((..((.....)).))))))))))).)))((..(((((....)))))..))............ ( -26.30, z-score = -1.77, R) >droSim1.chr3R 20364026 69 - 27517382 UCAGCUGCACUUGUUGUUCUCGUUCAGUCGGCGAGUGUAUCUGCGAGUGUGCAUCUGCACAUCCGAACA-------- .(((.(((((((((((..((.....)).))))))))))).)))((..(((((....)))))..))....-------- ( -26.30, z-score = -2.45, R) >consensus UCAGCUGCACUUGUUGUUCUCGUUCAGUCGGCGAGUGUAUCUGCGAGUGUGCAUCUGCACAUCCGAACA________ .(((.(((((((((((............))))))))))).)))((..(((((....)))))..))............ (-22.67 = -22.12 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:24 2011