| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,299,994 – 14,300,087 |
| Length | 93 |
| Max. P | 0.577579 |
| Location | 14,299,994 – 14,300,087 |
|---|---|
| Length | 93 |
| Sequences | 9 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 84.51 |
| Shannon entropy | 0.32235 |
| G+C content | 0.42675 |
| Mean single sequence MFE | -19.76 |
| Consensus MFE | -11.08 |
| Energy contribution | -11.20 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.577579 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14299994 93 - 27905053 --UGCGAAACAG-ACCCUAAUAAAUUUCGCAUACUUUGCGAAUUUAUGCUGAGCCACAAGAACAACAAUCAGC---GACGACUACAGCGACAGUUGUUC --.((....(((-......(((((((.((((.....))))))))))).))).)).....(((((((..((.((---..........))))..))))))) ( -20.40, z-score = -2.24, R) >droSim1.chr3R 20334986 90 + 27517382 --UGCGAAACAG-ACCCUAAUAAAUUUCGCAUACUUUGCGAAUUUAUGCUGAGCCACAAGAACAACAAUCAGC------GACUACAGCGACAGUUGUUC --.((....(((-......(((((((.((((.....))))))))))).))).)).....(((((((..((.((------.......))))..))))))) ( -21.00, z-score = -2.70, R) >droSec1.super_5 271187 90 + 5866729 --UGCGAAACAG-ACCCUAAUAAAUUUCGCAUACUUUGCGAAUUUAUGCUGAGCCACAAGAACAACAAUCAGC------GACUACAGCGACAGUUGUUC --.((....(((-......(((((((.((((.....))))))))))).))).)).....(((((((..((.((------.......))))..))))))) ( -21.00, z-score = -2.70, R) >droYak2.chr3R 2934057 90 - 28832112 --UGCGAAACAG-ACCCUAAUAAAUUUCGCAUACUUUGCGAAUUUAUGCUGAGCCACAAGAACAACAAUCAGC------GACUACAGCGACAGUUGUUC --.((....(((-......(((((((.((((.....))))))))))).))).)).....(((((((..((.((------.......))))..))))))) ( -21.00, z-score = -2.70, R) >droEre2.scaffold_4770 10408610 90 + 17746568 --UGCGAAACAG-ACCCUAAUAAAUUUCGCAUACUUUGCGAAUUUAUGCUGAGCCACAAGAACAACAAUCAGC------GACUACAGCGACAGUUGUUC --.((....(((-......(((((((.((((.....))))))))))).))).)).....(((((((..((.((------.......))))..))))))) ( -21.00, z-score = -2.70, R) >droAna3.scaffold_13340 13891723 96 + 23697760 --UGCGAAGCAG-ACCCUAAUAAAUUUCGCAUACUUUGCGAAUUUAUGCUGAGCCACAAAAACAACAAAAACAUAUAGCGACUACAGCGACAGUUGUUC --.((..((((.-.......((((((.((((.....))))))))))))))..))......................(((((((........))))))). ( -17.80, z-score = -1.38, R) >dp4.chr2 18900425 96 + 30794189 UGCGAAGAGCAGAACCUUAAUAAAUUUCGCAUACUUUGCGAAUUUAUGCUGAGCGACAAAGACAACAACAAGA---AGGGCGGACAGGCACCGUGGGUC (((.....)))...((((.(((((((.((((.....)))))))))))((...))..................)---)))((((.......))))..... ( -18.60, z-score = 0.25, R) >droWil1.scaffold_181130 5935017 82 + 16660200 --UGCG-AGCAG-ACCCUAAUAAAUUUCGCAUACUUUGCGAAUUUAUGCUGAGCAGCAGCAACAAAAACAAC------------CAGCGACAGUUGUU- --((((-..(((-......(((((((.((((.....))))))))))).)))..).)))........((((((------------........))))))- ( -18.40, z-score = -1.26, R) >droMoj3.scaffold_6540 25222143 79 + 34148556 --UGCG-AACAG-ACCCUAAUAAAUUUCGCAUACUUUGCGAAUUUAUGCUGAGGCACAACAACAGCA----------------ACAACGACAGUUGCUC --(((.-..(((-......(((((((.((((.....))))))))))).)))..))).......((((----------------((.......)))))). ( -18.60, z-score = -2.57, R) >consensus __UGCGAAACAG_ACCCUAAUAAAUUUCGCAUACUUUGCGAAUUUAUGCUGAGCCACAAGAACAACAAUCAGC______GACUACAGCGACAGUUGUUC .........(((.......(((((((.((((.....))))))))))).))).................................((((....))))... (-11.08 = -11.20 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:19 2011