| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,899,876 – 7,899,977 |
| Length | 101 |
| Max. P | 0.749359 |
| Location | 7,899,876 – 7,899,977 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 86.75 |
| Shannon entropy | 0.18595 |
| G+C content | 0.49123 |
| Mean single sequence MFE | -21.23 |
| Consensus MFE | -18.90 |
| Energy contribution | -18.90 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.749359 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7899876 101 - 23011544 AAUGUUCAAUGCAUAUGGGUCGCUGCUCCAUUUCCACAUGGACGCCACUGCAUGCAGUAUCCACUUUCGUACUAUCCACUAUCCAGUGUCCCGAACCCCAA ...((((.(((.(..(((((.((((((((((......))))).((....))..))))))))))..).)))......((((....))))....))))..... ( -23.00, z-score = -1.38, R) >droSec1.super_3 3414543 100 - 7220098 AAUGUUCAAUGCAUAUGGGUCGCUGCUCCAUUUCCACAUGGACGCCACUGCAUGCAGUAUCUACUAUC-CACUAUCCACUAUCCAGUGUCCCGAACCCCAA .((((.....)))).((((.(((((((((((......))))).)).((((....))))..........-...............)))).))))........ ( -22.40, z-score = -1.44, R) >droYak2.chr2L 17329103 88 + 22324452 AAUGUUCAAUGCAUAUGGGUCGCUGCUCCAUUUCCACAUGGACGCCACUGCCUA--------AC-----CACUAACCACUAUCCAGUGUCCCGAACCUUAA .((((.....)))).((((.(((((.(((((......))))).((....))...--------..-----..............))))).))))........ ( -18.30, z-score = -1.43, R) >consensus AAUGUUCAAUGCAUAUGGGUCGCUGCUCCAUUUCCACAUGGACGCCACUGCAUGCAGUAUC_ACU_UC_CACUAUCCACUAUCCAGUGUCCCGAACCCCAA .((((.....)))).((((.(((((.(((((......))))).((....))................................))))).))))........ (-18.90 = -18.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:24:39 2011