| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,299,400 – 14,299,494 |
| Length | 94 |
| Max. P | 0.885415 |
| Location | 14,299,400 – 14,299,494 |
|---|---|
| Length | 94 |
| Sequences | 8 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 77.95 |
| Shannon entropy | 0.41355 |
| G+C content | 0.56845 |
| Mean single sequence MFE | -39.08 |
| Consensus MFE | -18.39 |
| Energy contribution | -18.12 |
| Covariance contribution | -0.26 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.885415 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14299400 94 + 27905053 ---------GCUG-AAGCUCA-AAUGAGCCAUGUUGGCAGAGCUGCCAAAAUGCAGUCAACGGCGACGCCGACAGA--CGUCGACGCUCAGCC-----GAUGUCGUCAGCAG ---------((((-(.((((.-...))))..(((((((.((.((((......))))))...(....))))))))((--(((((.(.....).)-----)))))).))))).. ( -40.30, z-score = -3.24, R) >droSim1.chr3R 20334375 94 - 27517382 ---------GCUG-AAGCUCA-AAUGAGCCAUGUUGGCAGAGCUGCCAAAAUGCAGUCAACGGCGACGCCAACAGA--CGUCGACGCUCAGCC-----GAUGUCGUCAGCAG ---------((((-(.((((.-...))))..(((((((.((.((((......))))))...(....))))))))((--(((((.(.....).)-----)))))).))))).. ( -40.60, z-score = -3.70, R) >droSec1.super_5 270585 94 - 5866729 ---------GCUG-AAGCUCA-AGUGAGCCAUGUUGGCAGAGCUGCCAAAAUGCAGUCAACGGCGACGCCGACAGA--CGUCGACGCUCAGCC-----GAUGUCGUCAGCAG ---------((((-(.((((.-...))))..(((((((.((.((((......))))))...(....))))))))((--(((((.(.....).)-----)))))).))))).. ( -40.30, z-score = -2.88, R) >droYak2.chr3R 2933426 94 + 28832112 ---------CCUG-AAGCUCA-AAUGAGCCAUGUUGGCAGAGCUGCCAAAAUGCAGUCAACGGCGACGCCGCCAGA--CGUCGGCGCUCAUCC-----AAUGUCGUCAGCAG ---------....-..((((.-...))))..(((((((.((.((((......))))))...((((....)))).((--(((.((.......))-----.)))))))))))). ( -32.80, z-score = -1.41, R) >droEre2.scaffold_4770 10407976 96 - 17746568 ---------GCUG-AAGCUCA-AAUGAGCCAUGUUGGCAGAGCUGCCAAAAUGCAGUCAACGGCGACGCCGCCAGAGACGUCGGCGUUCAGCC-----GAUGUCGUCAGCAG ---------((((-(.((((.-...))))(((.((((((....)))))).)))........((((....))))...(((((((((.....)))-----)))))).))))).. ( -45.90, z-score = -4.49, R) >droAna3.scaffold_13340 13891000 110 - 23697760 GCGCUGAAGACGGCAAGCGCAGAAUUAGCAAUAUUGGCAGCGCUGCCAAAAUGCAGUCAACAGCGACGCCAUUAGA--UGUUGAUGCUCUGCUCCCUUGAUGUCAUCAGUGG .((((((.((((.((((.((((((((((((.((.((((..(((((...............)))))..)))).))..--)))))))..)))))...)))).)))).)))))). ( -43.06, z-score = -2.59, R) >dp4.chr2 18899991 105 - 30794189 ----GAUCGGCAAACGCCACGAAAUGAGCGAUGUUGGCAGCGCUGCCAAAAUGCAGUCAACGGCGACGCCAUUAGA--CGACG-UUCGUUGCGAUGUUGAUGUCGUCAGCAG ----....(((....))).((.((((((((...((((((....))))))......(((((.(((...))).)).))--)..))-)))))).)).(((((((...))))))). ( -35.10, z-score = -0.14, R) >droPer1.super_0 8614711 105 + 11822988 ----GAUCGGCAAACGCCACGAAAUGAGCGAUGUUGGCAGCGCUGCCAAAAUGCAGUCAACGACGACGCCAUUAGA--CGACG-UUCGUUGCGAUGUUGAUGUCGUCAGCAG ----....(((....))).((.((((((((.((((((((....))))..((((..(((......)))..)))).))--)).))-)))))).)).(((((((...))))))). ( -34.60, z-score = -0.38, R) >consensus _________GCUG_AAGCUCA_AAUGAGCCAUGUUGGCAGAGCUGCCAAAAUGCAGUCAACGGCGACGCCAACAGA__CGUCGACGCUCAGCC_____GAUGUCGUCAGCAG ...............................(((((((...(((((......)))))...((.(((((..........))))).))..................))))))). (-18.39 = -18.12 + -0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:18 2011