| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,299,231 – 14,299,348 |
| Length | 117 |
| Max. P | 0.529911 |
| Location | 14,299,231 – 14,299,348 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.63 |
| Shannon entropy | 0.53799 |
| G+C content | 0.52305 |
| Mean single sequence MFE | -38.76 |
| Consensus MFE | -18.80 |
| Energy contribution | -21.40 |
| Covariance contribution | 2.60 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.529911 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14299231 117 + 27905053 CAACCCUUCCCGUUUUCGUUUUCGCUUCCAUCACAGACUCCAAA-GUUGAGUCACAGCUCGUAGGGAUUGUGUGGAGCCAAGGGGAGGAU--UGUGGAUGAUGGGAAGAAGGAGGAGGAA ....(((((((.((..(((((((((.(((.(((((.(.(((...-..(((((....)))))...))).).)))))..((....)).))).--.))))).))))..))...)).))))).. ( -37.20, z-score = -0.24, R) >droSim1.chr3R 20334208 118 - 27517382 CAACCCUUUCCGUCUUCGUUUUCGCUUCCAUCACAGACUCCAA--GUUGAGUCACAGCUCGUGGGGAUUGUGUGGAGCCAAAGGGAGGAUGAUGUGGAUGAUGAGGAGAAGAAGGAGGAA ...(((((((..((((((((((((((((((.(((((.((((((--((((.....)))))..))))).))))))))))((....))........))))).))))))))...))))).)).. ( -40.30, z-score = -1.02, R) >droSec1.super_5 270425 111 - 5866729 CAACCCUUUUCGUCUUCGUUUUCGCUUCCAUCACAGGCUCCAA--GUUGAGUCA-------UGGAGAUUGUGUGGAGCCAAGGGGAGGACGAUGUGGAUGAUGGGGAGAAGAAGGAGGAA ...((((..((((((((((((((.((((((.(((((.(((((.--(......).-------))))).))))))))).....)).))))))))...)))))).)))).............. ( -40.70, z-score = -1.95, R) >droYak2.chr3R 2933267 110 + 28832112 CAACCCUUCCCGUUUUUGUUUUCGCUUCCAUCACAGACUCCAA--GCUGAGUCACAGCUCAUGGGGAUUGUGUGGAGCCAAAGGGAGGCU--UGUGGAUGAGAAGGAGGGGCAA------ ...(((((((..((((....(((((.((((.(((((.((((((--((((.....)))))..))))).)))))))))(((.......))).--.))))).)))).)))))))...------ ( -43.40, z-score = -1.96, R) >droAna3.scaffold_13340 13890832 94 - 23697760 CAACCCUUUCCGCAUUUGUCGCCAUCUCCA-----GACUCCAAAAUUUGAGUCAGAGCUC-CAAAGACUGCG----GUUGGGGAGGCGUCUGGGGGAAUGAGGC---------------- ....(((((((.(....(.((((.((((((-----(((((........)))))...((..-........)).----..)))))))))).)..).)))..)))).---------------- ( -32.20, z-score = -0.59, R) >consensus CAACCCUUUCCGUCUUCGUUUUCGCUUCCAUCACAGACUCCAA__GUUGAGUCACAGCUC_UGGGGAUUGUGUGGAGCCAAGGGGAGGAU__UGUGGAUGAUGAGGAGAAGAAGGAGGAA ....((((..(((((..((((((.((((((.(((((.(((((...((((.....))))...))))).))))))))).....)).)))))).....)))))..)))).............. (-18.80 = -21.40 + 2.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:18 2011