Locus 10506

Sequence ID dm3.chr3R
Location 14,276,815 – 14,276,919
Length 104
Max. P 0.597081
window14450

overview

Window 0

Location 14,276,815 – 14,276,919
Length 104
Sequences 4
Columns 105
Reading direction reverse
Mean pairwise identity 82.86
Shannon entropy 0.26333
G+C content 0.50290
Mean single sequence MFE -26.55
Consensus MFE -19.16
Energy contribution -19.35
Covariance contribution 0.19
Combinations/Pair 1.12
Mean z-score -1.69
Structure conservation index 0.72
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.21
SVM RNA-class probability 0.597081
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 14276815 104 - 27905053
AUGUGGAUUGCAAUUUGAGCAAUUGGAACUGCAAGUGCCUGGCUACUGGUACGA-UGCCAUACGGCACUUACAUACUAACUUACACACCCGACUCAGCCAAUCCG
....((((((....(((((...((((........(((((........)))))..-((((....)))).....................))))))))).)))))). ( -26.10, z-score =  -1.27, R)
>droYak2.chr3R 2909842 82 - 28832112
AUGCGGACUGCAAUUUGAGCAAUUUGAACUGGAAGUGCCUGGCUACUGGUUCGA-----------------------UACUUACACACCAGACUCAGCCAAUCCG
...((((..(((.(((.((.........)).))).))).(((((.(((((....-----------------------.........)))))....))))).)))) ( -18.32, z-score =  -0.41, R)
>droSec1.super_5 248150 93 + 5866729
AUGCGGAUUGCAAUUUGAGCAAUUGGAACUGCAAGUGCCUGGCUACUGGUACGAGUGCCAUACGGC------------ACUUACACACCCGACUCGGCCAAUCCG
...(((((((....(((((...((((...((.(((((((((((.(((......)))))))...)))------------)))).))...))))))))).))))))) ( -32.40, z-score =  -2.51, R)
>droSim1.chr3R 20311214 93 + 27517382
AUGCGGAUUGCAAUUUAAGCAAUUGGAACUGCAAGUGCCUUGCUACUGGUACGAGUGCCAUACGGC------------ACUUACACACCCGACUCAGCCAAUCCG
...(((((((...(((((....)))))...((..(((((........)))))(((((((....)))------------))))..............))))))))) ( -29.40, z-score =  -2.58, R)
>consensus
AUGCGGAUUGCAAUUUGAGCAAUUGGAACUGCAAGUGCCUGGCUACUGGUACGA_UGCCAUACGGC____________ACUUACACACCCGACUCAGCCAAUCCG
...(((((((....(((((...((((........(((((........)))))....(((....)))......................))))))))).))))))) (-19.16 = -19.35 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:16 2011