| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,265,538 – 14,265,631 |
| Length | 93 |
| Max. P | 0.934597 |
| Location | 14,265,538 – 14,265,631 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 67.91 |
| Shannon entropy | 0.52396 |
| G+C content | 0.29638 |
| Mean single sequence MFE | -16.68 |
| Consensus MFE | -6.12 |
| Energy contribution | -8.00 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.39 |
| SVM RNA-class probability | 0.934597 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14265538 93 - 27905053 GAACAUUCUUAGCCAAGAAUACUUCCAUUUCUGUAAAUUAUCCAGAAAAAUGAUUUUUCGUUUUAUAAAC-CACAUUUGGCGAAAAGAAAAAAC .....(((((.((((((............((((.........))))(((((((....)))))))......-....))))))...)))))..... ( -16.50, z-score = -2.66, R) >droSec1.super_5 237153 91 + 5866729 GAACAUUCUUAGCCAAGUAUACUUCCAUUUCUGUAAAUUAUCCAGAAAAAUGAUUUUUCGUUUUAUAAAC-CACACUUGGUGAAAAAAAAAC-- ...........(((((((...........((((.........))))(((((((....)))))))......-...)))))))...........-- ( -15.10, z-score = -2.31, R) >droSim1.chr3R 20299755 93 + 27517382 GAACAUUCUAAGCCAAGUAUACUUCCAUUUCUGUAAAUUAUCCAGAAAAAUGAUUUUUCGUUUUAUAAAC-CACACUUGGUGGAAAAAAAAAAC .....((((..(((((((...........((((.........))))(((((((....)))))))......-...)))))))))))......... ( -16.80, z-score = -2.38, R) >triCas2.ChLG3 29749665 94 + 32080666 CAAUACUUUAGGAGAUAUUACGAAUUACCGUUGCGACUUGUACAAGUACAAAAAGCAACGUAAUAAAAACGCAAUAGUGACGAAACUAAAUUUA ......(((((....(((((((......)(((((...(((((....)))))...)))))))))))....(((....)))......))))).... ( -18.30, z-score = -2.59, R) >consensus GAACAUUCUAAGCCAAGUAUACUUCCAUUUCUGUAAAUUAUCCAGAAAAAUGAUUUUUCGUUUUAUAAAC_CACACUUGGCGAAAAAAAAAAAC ...........(((((((...........((((.........))))(((((((....)))))))..........)))))))............. ( -6.12 = -8.00 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:15 2011