| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,259,861 – 14,259,925 |
| Length | 64 |
| Max. P | 0.980349 |
| Location | 14,259,861 – 14,259,925 |
|---|---|
| Length | 64 |
| Sequences | 4 |
| Columns | 64 |
| Reading direction | forward |
| Mean pairwise identity | 62.70 |
| Shannon entropy | 0.60892 |
| G+C content | 0.39728 |
| Mean single sequence MFE | -9.18 |
| Consensus MFE | -6.38 |
| Energy contribution | -5.88 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.05 |
| SVM RNA-class probability | 0.980349 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14259861 64 + 27905053 CCAAUUCCAACCCAAUUCAAAACUAUUUGCGCACCACUGUGCGUAUACGUAAUGCCCCAUAUUA ...........................(((((((....)))))))................... ( -9.10, z-score = -2.13, R) >droSec1.super_5 231644 63 - 5866729 UCAAUUCCAUCCUGAUA-AAAACUAUUUGCGCGCCACUGUGCGUAUACGUAAUGUCCGUUAUUA .............((((-...((....(((((((....)))))))...))..))))........ ( -9.80, z-score = -0.95, R) >droSim1.chr3R 20294172 59 - 27517382 -----GCAAUCCCAAUUAAAAAUUAUUCGCGCACCACUGUGCGUAUACGUAAUGUCCCUUGUUA -----((((.....((((.....(((.((((((....)))))).)))..)))).....)))).. ( -9.30, z-score = -1.52, R) >droVir3.scaffold_12963 12400916 55 - 20206255 --------AUUGGUAUU-AAAUGCAUGUAUACAUCGUCGUGAGUCUUGAUAAUGCCCUGAGUUU --------...((((((-(...(.(((....))))(.(....).)....)))))))........ ( -8.50, z-score = -0.04, R) >consensus _____UCCAUCCCAAUU_AAAACUAUUUGCGCACCACUGUGCGUAUACGUAAUGCCCCUUAUUA ............................((((((....)))))).................... ( -6.38 = -5.88 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:14 2011