| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,228,439 – 14,228,533 |
| Length | 94 |
| Max. P | 0.619761 |
| Location | 14,228,439 – 14,228,533 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 75.89 |
| Shannon entropy | 0.39887 |
| G+C content | 0.53408 |
| Mean single sequence MFE | -19.35 |
| Consensus MFE | -12.20 |
| Energy contribution | -12.32 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.619761 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14228439 94 - 27905053 UCAAUUUGCUCUCAGUGUGCCACAGUCCGACUGUGCGAUAAUCGCACAUCGAUAACACUCGAUACACACA---------CCAGCUGUUCCGCCCGCUCCCCCC .............((((.((.(((((......(((((.....)))))(((((......))))).......---------...)))))...)).))))...... ( -21.60, z-score = -2.31, R) >droEre2.scaffold_4770 10330701 103 + 17746568 AUAAUUUCAUUUCAGUGCGCCACAGUCCGAUAGUGCGAUAACCCCACAUCGAUUACACUCGAUAGGCACAUCUCCAUCGCCAGCUGUUCCACCUGCUCCCCCC ............(((.(.(..(((((.((((.(((.(......)))))))).............(((...........))).)))))..).))))........ ( -15.90, z-score = -0.57, R) >droYak2.chr3R 2857987 98 - 28832112 UUAAUUUUCUCUCAGUGUGCCACUGGCCGAUACUGCGAUAACUGCACAUCGAUUCCACUUGAUAAACACAUCUCCAUCACCAGCUGUUCCGGCUACUC----- ............(((((...)))))((((..((.(((((........)))..........(((......)))..........)).))..)))).....----- ( -15.80, z-score = -0.30, R) >droSim1.chr3R 20272770 95 + 27517382 --------CUCUCAGUGCUCCACAGGCCGAUAGUGCGAUAAUCGCACAUCGAUAACACUCGAUACACACACCUCCAUCGCCAGCUGUUCCGCCUGCGCCCCCC --------......((((......(((.(((.(((((.....)))))(((((......)))))............)))))).((......))..))))..... ( -24.10, z-score = -2.41, R) >consensus UUAAUUU_CUCUCAGUGCGCCACAGGCCGAUAGUGCGAUAACCGCACAUCGAUAACACUCGAUACACACAUCUCCAUCGCCAGCUGUUCCGCCUGCUCCCCCC ..............((((..............(((((.....)))))(((((......)))))..)))).................................. (-12.20 = -12.32 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:13 2011