| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,224,289 – 14,224,388 |
| Length | 99 |
| Max. P | 0.798885 |
| Location | 14,224,289 – 14,224,388 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 85.46 |
| Shannon entropy | 0.24160 |
| G+C content | 0.47790 |
| Mean single sequence MFE | -32.26 |
| Consensus MFE | -17.14 |
| Energy contribution | -17.62 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.78 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.798885 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14224289 99 + 27905053 AUUCACAUGACAAGGGUUCGACUAACACACACACACACUGCGAACGUAGUAGGUGCGU------ACCUG--------AGUAUCUCAGAGAUACUCGGGGCUUACGAAAGAGAU ................((((........((.(((..(((((....)))))..))).))------.((((--------((((((.....)))))))))).....))))...... ( -30.00, z-score = -2.81, R) >droSim1.chr3R 20267077 99 - 27517382 AUUCACAUGACAAGGGUUCGACUAACACACACACACACUGCGAACGUUGUAGGUGCGU------ACCUG--------AGUAUCUCAGAGAUACUCGGGGCUUACGAAAGAGAU ................((((..........((.(((.((((((...))))))))).))------.((((--------((((((.....)))))))))).....))))...... ( -28.40, z-score = -2.10, R) >droSec1.super_5 195662 98 - 5866729 AUUCACAUGACAAGGGU-CGACUAACACACACACACAUUGCGAACGUAGUAGGUGCGU------ACCUG--------AGUAUCUCAGAGAUACUCGGGGCUUACGAAAGAGAU .......((((....))-))........((.(((..(((((....)))))..))).))------.((((--------((((((.....)))))))))).....(....).... ( -28.10, z-score = -2.39, R) >droYak2.chr3R 2853518 109 + 28832112 AUUCACAUGACAGGGGUGCGACUAACACAUACAC----UGCGAAAGUGGUAGGUGCGUACGCGUACCCGUACCGUAGAGUAUCUCACAGAUACACGGGGCUUACGAAAGAGAU .(((.........(((((((....((.(((..((----..(....)..))..))).))...)))))))(..((((...(((((.....)))))))))..)....)))...... ( -36.70, z-score = -2.52, R) >droEre2.scaffold_4770 10326339 103 - 17746568 AUUCUCAUGACAAGGGUGCGACUAACACAUACAC----UGCGAAAGUGGUAAGUGCGU------ACCCGUAUCUCAGAGUAUCUCAGAGAUACUCGGGGCUUACGAAAGAGAU ..((((.......(((((((.....(((....((----..(....)..))..))))))------))))(((.(((.(((((((.....))))))).)))..)))....)))). ( -38.10, z-score = -4.09, R) >consensus AUUCACAUGACAAGGGUGCGACUAACACACACACACA_UGCGAACGUAGUAGGUGCGU______ACCUG________AGUAUCUCAGAGAUACUCGGGGCUUACGAAAGAGAU .............((((...........((.(((..(((((....)))))..))).)).......((((........((((((.....)))))))))))))).(....).... (-17.14 = -17.62 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:12 2011