| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,223,769 – 14,223,872 |
| Length | 103 |
| Max. P | 0.667869 |
| Location | 14,223,769 – 14,223,872 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.11 |
| Shannon entropy | 0.41043 |
| G+C content | 0.47713 |
| Mean single sequence MFE | -29.63 |
| Consensus MFE | -14.78 |
| Energy contribution | -16.82 |
| Covariance contribution | 2.04 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.667869 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14223769 103 - 27905053 CGUCCAGUUAAUUAGCUAUAUAAAGCCAAAGCCCGGCCACUCGAGUCGCCGAUCUCCAGUUACGUAACUCUAUAUG----UA--UGGCUUAUCGGGGAAGUGGUC-GGCA---------- ..............(((......)))....(((.(((((((....((.(((((..(((..((((((......))))----))--)))...))))).)))))))))-))).---------- ( -32.30, z-score = -1.85, R) >droSim1.chr3R 20266558 105 + 27517382 CGUCCAGUUAAUUAGCUAUAUAAAGCCAAAGCCCGGCCACUCGAGUCGUCGAUCUCCAGUUACGUAACACUAUAUG----UACCUAGCUUAUCGGGGGAGUGGUC-GGCA---------- ..............(((......)))....(((.((((((((....(.(((((..(.((.((((((......))))----)).)).)...))))).)))))))))-))).---------- ( -29.10, z-score = -0.88, R) >droSec1.super_5 195143 105 + 5866729 CGUCCAAUUAAUUAGCUAUAUAAAGCCACAGCCCGGCCACUCGAGUCGCCGAUCUCCAGUUACGUAACUCUAUAUG----UACAUAGCUUAUCGGCGGAGUGGUC-GGCA---------- ..............(((......)))....(((.((((((((....(((((((....(((((.(((.(.......)----))).))))).)))))))))))))))-))).---------- ( -35.00, z-score = -3.19, R) >droYak2.chr3R 2853015 107 - 28832112 CGUCCGGCUAAUAACCUAUAUAAAGCCAAAGCCUGGCCACUCGAGUCGCUGAUCUCCAGUUACGUAACUCUAUAAGUUCUUAUGUAUCUUAUCG--GGAGUGGUC-GACA---------- .(((.((((..............)))).......((((((((((((..(((((.....)))).)..)))).(((((..(....)...)))))..--.))))))))-))).---------- ( -29.44, z-score = -1.93, R) >droEre2.scaffold_4770 10325842 107 + 17746568 CGUCCGGCUAAUUACCUAUAUAAAGUCAAAGCCCCUCCACUCAAGUCUCCGAUCUCCAGUUACGUAACUCUAUAGCUACCUACAUAUCUUAUCG--GGAGUGGUC-GGCA---------- .....((((..............))))...(((...((((((......(((((.....((...(((.((....)).)))..)).......))))--)))))))..-))).---------- ( -20.04, z-score = -0.20, R) >droAna3.scaffold_13340 13816882 104 + 23697760 CGUCUGGGGUAUUAAUU-UAUAAUACC----CCUG--CACUCGAGCCG-UGAUCUCCAGUUACGUAACUCUCCAG-----UGCA-AGCUUUUCG--GAAGUAAUCAGGCAUUGCUUUUCA .(((((((((((((...-..)))))))----))((--((((.(((.((-((((.....)))))).....))).))-----))))-.(((((...--)))))....))))........... ( -31.90, z-score = -3.33, R) >consensus CGUCCAGUUAAUUAGCUAUAUAAAGCCAAAGCCCGGCCACUCGAGUCGCCGAUCUCCAGUUACGUAACUCUAUAUG____UACAUAGCUUAUCG__GGAGUGGUC_GGCA__________ ..............................(((.((((((((....(.(((((....(((((.(((..............))).))))).))))).))))))))).)))........... (-14.78 = -16.82 + 2.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:12 2011