| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,209,884 – 14,209,980 |
| Length | 96 |
| Max. P | 0.510548 |
| Location | 14,209,884 – 14,209,980 |
|---|---|
| Length | 96 |
| Sequences | 10 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 62.32 |
| Shannon entropy | 0.74356 |
| G+C content | 0.45333 |
| Mean single sequence MFE | -18.91 |
| Consensus MFE | -7.89 |
| Energy contribution | -7.81 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.36 |
| Mean z-score | -0.62 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.510548 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14209884 96 - 27905053 ----------------------CAU-CUUACCUUUUAAUAAUUAUUUUGUUCCAACUGUAGACCCGCAAACAUGCUGCCCAAAUCAAGCCUGGGAAGCUACUUGUACGACAGCGAUCCU ----------------------...-.............................((((......((((....(((.((((.........)))).)))...))))...))))....... ( -13.10, z-score = 0.52, R) >droSim1.chr3R 20249733 96 + 27517382 ----------------------GAU-GUUAAUUCUUAAUAAUUAUUUUGUUCCAACUGUAGACCCGCGAACAUGCUGCCCAAAUCAAGUCUGGGAAGCUACUUGUACGACAGCGAUCCU ----------------------(((-(((.......(((((.....)))))..............(((.(((.(((.((((.........)))).)))....))).)).)))).))).. ( -12.90, z-score = 1.21, R) >droSec1.super_5 178432 96 + 5866729 ----------------------GAU-GUUAAUUCUUAAUAAUUAUUUUGUUCCAACUGUAGACCCGCGAACAUGCUGCCCAAAUCAAGUCUGGGAAGCUACUUGUACGACAGCGAUCCU ----------------------(((-(((.......(((((.....)))))..............(((.(((.(((.((((.........)))).)))....))).)).)))).))).. ( -12.90, z-score = 1.21, R) >droYak2.chr3R 2828953 119 - 28832112 CAACCAAGAUCUAUCAAUAUAUUAUAACCAAUUAUUAAAUAUUAUUUUGUUUUAACUGUAGACCCGCAAACAUGCUGCCCAAAUCCAGUUUGGGGAGCUACUUGUACGACAGCGAUCCU .......((((....(((((...((((....))))...)))))............((((......((((....(((.(((((((...))))))).)))...))))...)))).)))).. ( -21.90, z-score = -1.45, R) >droEre2.scaffold_4770 10318114 119 + 17746568 AAACGCUUAUAUAAAGUUACAUUGAAACCAAUUACUUAAAAUUAUUUCGUUCUAACUGUAGACCCGCAAACAUGCUGCCCAAAUCCAGUUUGGGCAGCUACUUGUACGACAGCGAUCCU ...((((......((((...((((....)))).)))).........((((((((....))))...((((....(((((((((((...)))))))))))...)))))))).))))..... ( -30.20, z-score = -4.02, R) >dp4.chr2 18801496 92 + 30794189 ---------------------------GAUCCUAAUUCUUUCCCUUCCCUUUCUCUAUCAGGCCUGCCAAUAUGCUUCCGCAAUCCAGCCUGGGAAGCUACAUCUACGACAGUGAUCCG ---------------------------((((((...........................((....)).....((((((.((........))))))))............)).)))).. ( -16.00, z-score = -0.54, R) >droPer1.super_0 8507844 92 - 11822988 ---------------------------GAUCCUAAAGACGUCCCUUCCCUUACUCUAUCAGGCCUGCCAAUAUGCUUCCGCAGUCCAGCCUGGGAAGCUACAUCUACGACAGCGAUCCG ---------------------------((((((..(((.((..((((((..........((((((((............))))....))))))))))..)).))).....)).)))).. ( -20.80, z-score = -1.07, R) >droWil1.scaffold_181089 1054376 96 - 12369635 -----------------------GAAAUCAAUUUUUUAUUUUUAUUUUGUUCAUUUUUUAGGCCCGCCAAUAUGUUGCCCAAGGCCAGUCUGGGCAGCUACAUCUACGACAGUGAUCCA -----------------------...........................(((((.....((....)).....((((((((.((....))))))))))............))))).... ( -18.30, z-score = -0.48, R) >droVir3.scaffold_12855 5478925 110 + 10161210 --------GCCGGGUAUUAUGAGACAAUCCGUCAUUUCUAAUC-UGUGAAUCCAUUGACAGACCCGCCAACAUGCUGCCUACCAGCAGCCUGGGCAGCUACAUCUACGACAGCGAUCCG --------(((((((.......(((.....))).........(-(((.((....)).)))))))).....((.(((((......))))).))))).(((...........)))...... ( -28.80, z-score = -1.09, R) >droMoj3.scaffold_6540 25103506 77 + 34148556 ----------------------------------------AUU-U-CCAAUACAUCCACAGACCCGCCAACAUGCUGCCCAGCAGCAGCCUGGGAAGCUACAUCUACGACAGCGAUCCG ----------------------------------------...-.-........................((.(((((......))))).))(((.(((...........)))..))). ( -14.20, z-score = -0.48, R) >consensus _______________________AU_AUCAAUUAUUAAUAAUUAUUUUGUUCCAACUGUAGACCCGCCAACAUGCUGCCCAAAUCCAGCCUGGGAAGCUACAUCUACGACAGCGAUCCU ................................................................(((......(((.((((.........)))).)))..(......)...)))..... ( -7.89 = -7.81 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:11 2011