| Sequence ID | dm3.chr2L |
|---|---|
| Location | 755,607 – 755,714 |
| Length | 107 |
| Max. P | 0.829887 |
| Location | 755,607 – 755,714 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 65.14 |
| Shannon entropy | 0.63700 |
| G+C content | 0.37838 |
| Mean single sequence MFE | -20.42 |
| Consensus MFE | -11.13 |
| Energy contribution | -11.53 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.44 |
| Mean z-score | -0.80 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.829887 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 755607 107 - 23011544 -----------AUAGAGGGUCUCUAGGCGAUGUGGUCUGCUAAUGAAACAUUUAUCCAUGCGGACUGGACGAACAAAAAACUUGAAGAUAAACUCAGAGAAAUAAGUUAACGUAAAAA-- -----------...(((.((((.((((((.(.((((((((..((((.....))))....)))))))).))).........)))).))))...))).......................-- ( -17.90, z-score = 0.13, R) >droSim1.chr2L 757694 109 - 22036055 -----------GAAGAGGUUCUCUAGGCGAUGUGGUCUGCUAAUGAAAUAUUUAUCCAUGCGGGCUGAACGAACCAAAAACUUGUAGACAAACUUAGAGAAAUAAGUUAAACAAAGAUAA -----------.......(((((((((((...((((((((..((((.....))))....))))))))..))..........(((....))).)))))))))................... ( -20.00, z-score = -0.44, R) >droSec1.super_14 727372 109 - 2068291 -----------GAAGAGGUUCUCUAGGCGAUUUGGUCUGCUAAUGAAACAUUUAUCUAUGCGGGCUGAACGAACCAAAAACUUGUAGACAAACUUAGAGAAAUAAGUUAAACAAAGAUAA -----------.......(((((((((((.((..((((((....((........))...))))))..))))..........(((....))).)))))))))................... ( -23.60, z-score = -1.82, R) >droYak2.chr2L 739517 88 - 22324452 ------------GAAGGGGUCUCUGGGCGAUGGGGCCUGCUAAUGAAAAAAUUAUCCAUGCGGGCUGAACGAACCAAAAACUUGAAG--AAACUUAGAGAAA------------------ ------------.......((((((((((.(..(((((((..((((.....))))....)))))))..)))...(((....)))...--...))))))))..------------------ ( -20.50, z-score = -0.93, R) >droEre2.scaffold_4929 810107 109 - 26641161 -----------GAAGAGAGGCUCUGGGCGACGUGGCCUGCUAAUGAAACAUUUAUCCAUGCGGGCUGAACGAACCAAUAAGCUGAAGACAAACUUAGAGAAAUGAGUUAAACAAAGAUAG -----------.......((((.(((....((((((((((..((((.....))))....)))))))..)))..)))...)))).......((((((......))))))............ ( -22.80, z-score = -0.84, R) >apiMel3.Group7 2458427 112 + 9974240 AUAAGGCAAAUAUAUGUAAUUCCGUGUCGAUGAGUUAUAGAUAUUUGUUCAUUUUUCAUAGAAAAUACAC--ACGAGAUAUUUUUA---CAUUUCAGAGAGAAGAAAAGAAGGAAAA--- ....(((((((((.((((((((.........)))))))).)))))))))..((((((...((((((((..--....).))))))).---..((((........)))).))))))...--- ( -17.70, z-score = -0.91, R) >consensus ___________GAAGAGGGUCUCUAGGCGAUGUGGUCUGCUAAUGAAACAUUUAUCCAUGCGGGCUGAACGAACCAAAAACUUGAAGACAAACUUAGAGAAAUAAGUUAAACAAAGAU__ ...................((((((((......(((((((...................)))))))........(((....)))........)))))))).................... (-11.13 = -11.53 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:06:45 2011