| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,191,881 – 14,191,941 |
| Length | 60 |
| Max. P | 0.971026 |
| Location | 14,191,881 – 14,191,941 |
|---|---|
| Length | 60 |
| Sequences | 4 |
| Columns | 60 |
| Reading direction | forward |
| Mean pairwise identity | 77.44 |
| Shannon entropy | 0.36430 |
| G+C content | 0.43395 |
| Mean single sequence MFE | -14.91 |
| Consensus MFE | -7.32 |
| Energy contribution | -8.45 |
| Covariance contribution | 1.13 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.513944 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14191881 60 + 27905053 GAGGGGUAGGCGCACAUAAACACCACAGUACGAAAAAAUACUGUGACAAUCGAUAAGUGC ...........((((........(((((((........))))))).(....)....)))) ( -10.70, z-score = -1.01, R) >droSec1.super_5 160928 60 - 5866729 GAGGGGUAGGCGCUCGUAAAUACCACAGUACGGAAAAAUACUGUGGCACUCGGUAUGUGC (((((((....)))).......((((((((........))))))))..)))......... ( -16.60, z-score = -1.22, R) >droYak2.chr3R 2804379 58 + 28832112 GAGGGGUAUGCACU-AGAAAUACCUCAGUAUGUAGAAAUACCGUGACAAUCUAUAUACU- ..(((((((.....-....)))))))((((((((((.............))))))))))- ( -16.62, z-score = -2.98, R) >droEre2.scaffold_4770 10300909 59 - 17746568 GAGGGGUAGACACCCAAAAAUACCACAGUAUGUAGAAAUACUGUGACGAUCUAUAUAUG- ...((((....))))........((((((((......))))))))..............- ( -15.70, z-score = -2.82, R) >consensus GAGGGGUAGGCACUCAUAAAUACCACAGUACGUAAAAAUACUGUGACAAUCGAUAUAUG_ ...((((....))))........((((((((......))))))))............... ( -7.32 = -8.45 + 1.13)
| Location | 14,191,881 – 14,191,941 |
|---|---|
| Length | 60 |
| Sequences | 4 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 77.44 |
| Shannon entropy | 0.36430 |
| G+C content | 0.43395 |
| Mean single sequence MFE | -15.12 |
| Consensus MFE | -9.45 |
| Energy contribution | -9.08 |
| Covariance contribution | -0.37 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.84 |
| SVM RNA-class probability | 0.971026 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14191881 60 - 27905053 GCACUUAUCGAUUGUCACAGUAUUUUUUCGUACUGUGGUGUUUAUGUGCGCCUACCCCUC ((((.((.....(..((((((((......))))))))..)..)).))))........... ( -16.20, z-score = -3.37, R) >droSec1.super_5 160928 60 + 5866729 GCACAUACCGAGUGCCACAGUAUUUUUCCGUACUGUGGUAUUUACGAGCGCCUACCCCUC ((.(.....((((((((((((((......))))))))))))))....).))......... ( -19.20, z-score = -4.14, R) >droYak2.chr3R 2804379 58 - 28832112 -AGUAUAUAGAUUGUCACGGUAUUUCUACAUACUGAGGUAUUUCU-AGUGCAUACCCCUC -.((((.((((.(..(.((((((......)))))).)..)..)))-)))))......... ( -11.30, z-score = -0.69, R) >droEre2.scaffold_4770 10300909 59 + 17746568 -CAUAUAUAGAUCGUCACAGUAUUUCUACAUACUGUGGUAUUUUUGGGUGUCUACCCCUC -.............(((((((((......))))))))).......((((....))))... ( -13.80, z-score = -1.60, R) >consensus _CACAUAUAGAUUGUCACAGUAUUUCUACAUACUGUGGUAUUUAUGAGCGCCUACCCCUC ..............(((((((((......)))))))))...................... ( -9.45 = -9.08 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:10 2011