| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,182,771 – 14,182,828 |
| Length | 57 |
| Max. P | 0.922575 |
| Location | 14,182,771 – 14,182,828 |
|---|---|
| Length | 57 |
| Sequences | 10 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 70.32 |
| Shannon entropy | 0.61674 |
| G+C content | 0.49188 |
| Mean single sequence MFE | -17.09 |
| Consensus MFE | -8.33 |
| Energy contribution | -8.62 |
| Covariance contribution | 0.29 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.29 |
| SVM RNA-class probability | 0.922575 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14182771 57 + 27905053 -CUUGCGACUACUCAGUGCUGCAUACUUUGUGGCGCCGUCUU-GGCAGCCGAGAAACAA-- -(((((..(((..(.((((..((.....))..)))).)...)-))..).))))......-- ( -15.60, z-score = -0.17, R) >droSim1.chr3R 20222829 57 - 27517382 -CUUGCGACUACUUGGUGCUGCAUACUUUGCGGCGCCGUCUU-GGCAGCCGAGAAACAA-- -(((((..(((..((((((((((.....))))))))))...)-))..).))))......-- ( -22.50, z-score = -2.64, R) >droSec1.super_5 151840 57 - 5866729 -CUUGCGACUACUUGGUGCUGCAUACUUUGUGGCGCCGUCUU-GGCAGCCGAGAAACAA-- -(((((..(((..((((((..((.....))..))))))...)-))..).))))......-- ( -20.00, z-score = -1.87, R) >droYak2.chr3R 2795096 57 + 28832112 -AUUGCGACUACUUGGUGCUGCAUACUUUGCGGCGCCGUCUC-GGCAGCCGAGAAACAU-- -.............(((((((((.....))))))))).((((-((...)))))).....-- ( -24.20, z-score = -3.19, R) >droEre2.scaffold_4770 10291653 57 - 17746568 -CUUGCGACUACUUAGUGCUGCAUACUUGGCGGCGCCGUCCU-GGCAGCCGAGAAACAA-- -..(((((((....)))..))))..((((((...(((.....-))).))))))......-- ( -16.30, z-score = 0.00, R) >droAna3.scaffold_13340 13779343 58 - 23697760 GCUGCUGACUACUAAGUGCUGCAUACUUUGCGGCGCCUUGUU-GGCAGUCGAGAAAGAA-- (((((..((......((((((((.....))))))))...)).-.)))))..........-- ( -24.00, z-score = -3.20, R) >dp4.chr2 18773351 56 - 30794189 ----GCGAAUACUUAGUGUUGCAUACUUUGCGGCGCCGUUUCAGGCAGUCGGGAAAACAA- ----((.(((((...)))))))....(((.(((((((......))).)))).))).....- ( -15.30, z-score = -0.69, R) >droPer1.super_0 8478351 56 + 11822988 ----GCGAAUACUUAGUGUUGCAUACUUUGCGGCGCCGUUUCAGGCAGUCGGGAAAACAA- ----((.(((((...)))))))....(((.(((((((......))).)))).))).....- ( -15.30, z-score = -0.69, R) >droWil1.scaffold_181089 1028483 56 + 12369635 --UUUCAAAUACUUUAUGUUGCAUACUUUGUGGAGCUUUUUU-GAAGUAUGAAAAAAAA-- --(((((..(((((((.(((.(((.....))).))).....)-))))))))))).....-- ( -10.80, z-score = -1.94, R) >droGri2.scaffold_14906 6946923 58 - 14172833 ---UUUGCUGACUAAGUAAGGACUUUCCUGUAGCACUAUGCUCUAUGUAUCACAAAAACAA ---..(((((...((((....)))).....)))))..((((.....))))........... ( -6.90, z-score = 0.54, R) >consensus _CUUGCGACUACUUAGUGCUGCAUACUUUGCGGCGCCGUCUU_GGCAGCCGAGAAACAA__ ...............((((((((.....))))))))......................... ( -8.33 = -8.62 + 0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:08 2011