| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,174,239 – 14,174,289 |
| Length | 50 |
| Max. P | 0.531215 |
| Location | 14,174,239 – 14,174,289 |
|---|---|
| Length | 50 |
| Sequences | 4 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 81.00 |
| Shannon entropy | 0.30829 |
| G+C content | 0.45000 |
| Mean single sequence MFE | -12.42 |
| Consensus MFE | -6.55 |
| Energy contribution | -7.67 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.531215 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14174239 50 + 27905053 UUUUCUACCCAUGUCCGCCUUACGUGCUUACAUGUGAUUGUGGAGAGAGA ...(((.....(.(((((.(((((((....)))))))..))))).).))) ( -12.90, z-score = -2.28, R) >droSim1.chr3R 20214305 50 - 27517382 UUUUCUACCCAUGUCCGCCUUACGUGCUUACAUGUGAUUGUGGAGAGAGA ...(((.....(.(((((.(((((((....)))))))..))))).).))) ( -12.90, z-score = -2.28, R) >droSec1.super_5 143372 50 - 5866729 UUUUCAACCCAUGUCCACCUUACGUGCUUACAUGUGAUUGUGGAGAGAGA ........(..(.(((((.(((((((....)))))))..))))).)..). ( -13.00, z-score = -2.15, R) >droAna3.scaffold_13340 13771319 50 - 23697760 UUUUUUGUCAGGCCCCGCUUUACGUGCUUACAUACGAGUACACAGAGAAA ((((((((.((((...))))...((((((......)))))))))))))). ( -10.90, z-score = -1.84, R) >consensus UUUUCUACCCAUGUCCGCCUUACGUGCUUACAUGUGAUUGUGGAGAGAGA .............(((((.(((((((....)))))))..)))))...... ( -6.55 = -7.67 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:07 2011