| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,142,987 – 14,143,096 |
| Length | 109 |
| Max. P | 0.919588 |
| Location | 14,142,987 – 14,143,096 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 73.58 |
| Shannon entropy | 0.48225 |
| G+C content | 0.60515 |
| Mean single sequence MFE | -36.10 |
| Consensus MFE | -18.28 |
| Energy contribution | -21.00 |
| Covariance contribution | 2.72 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.27 |
| SVM RNA-class probability | 0.919588 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14142987 109 - 27905053 CGACAGGGAGGAGUACGGCUUGGAUUUGCAGCUGGAGAUGGAGUCUGAGCUGAGGCUGGAGGAACCGGCGGAAGCGGAACCGGAAACGGAAACGAACCAGGCAGCGGAU ((.(...........(((((..(((((.((........)))))))..))))).(.((((.....(((.(....))))..(((....))).......)))).).)))... ( -37.80, z-score = -3.00, R) >droSim1.chr3R 20178395 109 + 27517382 CGACAGGGAGGAGUACGGCUUGGAUUUGCAGCUGGAGAUGGAGUCUGAGCUGAGGCUGGAGGGCCCGGCGGAAGCGGAACCGAAAACGGAAACGAACCAGGCAGCGGAU ((.(...........(((((..(((((.((........)))))))..))))).(.((((.((..(((.(....))))..)).....((....))..)))).).)))... ( -38.90, z-score = -2.43, R) >droSec1.super_12 2115413 109 + 2123299 CGACAGGGAGGAGUACGGCUUGGAUUUGCAGCUGGAGAUGGAGUCUGAGCUGAGGCUGGAGGCCCCGGUGGAAGCGGAACCGGAAACGGAAACGAACCAGGCAGCGGAU ((.(...........(((((..(((((.((........)))))))..))))).(.((((.....(((((.........)))))...((....))..)))).).)))... ( -35.60, z-score = -1.06, R) >droEre2.scaffold_4770 10254381 109 + 17746568 CGACAGGGAGGAGUACGGCUUGGAUUUGCAGCUGGAGAUGGAGUCUGAGUUGAGGCUGGAAGCUCCGGCGGCAGCGGAACCGGAAACGGAAACGAACCAGGCAGCGGAU ((((........)).))((((((..((((.(((((((....(((((......))))).....))))))).))))((...(((....)))...))..))))))....... ( -40.50, z-score = -2.70, R) >droVir3.scaffold_12855 5407762 82 + 10161210 CGACAAGGAGGCGUGCACCAUGGCGACACAGCUUCAGCUUGAAUCCG-GCAACUGAUUUAUGUGCUGCACGCGGCCAGGCAGA-------------------------- ......((..((((((.....(((......)))..(((.((((((.(-....).))))))...)))))))))..)).......-------------------------- ( -27.70, z-score = -0.52, R) >consensus CGACAGGGAGGAGUACGGCUUGGAUUUGCAGCUGGAGAUGGAGUCUGAGCUGAGGCUGGAGGCCCCGGCGGAAGCGGAACCGGAAACGGAAACGAACCAGGCAGCGGAU ...............((((((((((((.((........)))))))))))))).(.((((......(.((....)).)..(((....))).......)))).)....... (-18.28 = -21.00 + 2.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:25:00 2011