| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,139,401 – 14,139,540 |
| Length | 139 |
| Max. P | 0.738132 |
| Location | 14,139,401 – 14,139,540 |
|---|---|
| Length | 139 |
| Sequences | 4 |
| Columns | 144 |
| Reading direction | reverse |
| Mean pairwise identity | 66.55 |
| Shannon entropy | 0.54053 |
| G+C content | 0.35197 |
| Mean single sequence MFE | -33.47 |
| Consensus MFE | -15.90 |
| Energy contribution | -16.34 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.738132 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14139401 139 - 27905053 AGUUUUGUGCUCAAUUCGUGUCUUUACGAGGCAUAUAAUUAUUAUAUG--CUAGCUAUUCGAAUGGUAAAAUAAGUAUAUACUAUAUGGCA---CCAUUCAUUUAUAGAAUGGCUUGUUAAAUGCGUGUAUCAUUUCAACGGGG ((((.((((((....(((((....))))))))))).))))..((((((--(.(((((((((((((((...((((((....))).)))...)---)))))).......))))))))........))))))).............. ( -32.81, z-score = -1.58, R) >droPer1.super_0 8425462 125 - 11822988 AGAUAUUUGAAAAGUGAGGCAUCUUCCAAUAUUUGAAACUAUUUUCUGUUUCAUCUAUAUCAAAUGGGUACCAAUCAAAAACCAUACAAUACCCUUGGUCCUUCAAAG-GUACCAAAAUGAUGGGG------------------ ...(((((((...(.((((...))))).(((..((((((........))))))..))).)))))))((((((........((((...........))))........)-)))))............------------------ ( -24.59, z-score = -0.18, R) >droSec1.super_12 2111865 139 + 2123299 AGUUGUGUGCUCAAUUCGUAUCUUUACGAGGCAUAUAAUUAUGAUAUG--CCAGCCAUUCGAAUGGGAAAAUAAGUAUAUACUAUAUGGCA---CCAUUCAUUUAUAGAAUGGCUUGUUAAAUGCGUGUAUCAGUUCAACGAGG (((((((((((....(((((....)))))))))))))))).(((((((--(.((((((((((((((....((((((....))).)))....---)))))).......)))))))).((.....))))))))))........... ( -40.01, z-score = -2.90, R) >droSim1.chr3R 20174475 142 + 27517382 AGUUGUGUGCUCAAUUCGUGUCUUUACGAGGCAUAUAAUUAUGAUAUG--CCAGCUAUUCGAAUGGGAAAAUAAGUAUAUACUAUAUGGCACCACCAUUCAUUUAUAGAAUGGCUUGUUAAAUGCGUGUAUCAGUUCAACGGGG (((((((((((....(((((....)))))))))))))))).(((((((--(.((((((((((((((........(((((...))))).......)))))).......)))))))).((.....))))))))))........... ( -36.47, z-score = -1.19, R) >consensus AGUUGUGUGCUCAAUUCGUGUCUUUACGAGGCAUAUAAUUAUGAUAUG__CCAGCUAUUCGAAUGGGAAAAUAAGUAUAUACUAUAUGGCA___CCAUUCAUUUAUAGAAUGGCUUGUUAAAUGCGUGUAUCAGUUCAACGGGG (((((((((((....(((((....))))))))))))))))............((((((((..((((...............)))).(((.....)))..........))))))))............................. (-15.90 = -16.34 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:24:59 2011