| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,100,673 – 14,100,758 |
| Length | 85 |
| Max. P | 0.747276 |
| Location | 14,100,673 – 14,100,758 |
|---|---|
| Length | 85 |
| Sequences | 13 |
| Columns | 85 |
| Reading direction | reverse |
| Mean pairwise identity | 89.95 |
| Shannon entropy | 0.20779 |
| G+C content | 0.47964 |
| Mean single sequence MFE | -16.20 |
| Consensus MFE | -14.09 |
| Energy contribution | -13.45 |
| Covariance contribution | -0.64 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.747276 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 14100673 85 - 27905053 CUGUUGGUCCUCCUUGAAGAUCAGCUCACGCUUCUCGAACUCGUUCUCGUUCUUACCACGACGACGAUUCUUGCCUCCUUUUCCU ..(((((((.((...)).)))))))...........(((.(((((.((((.......)))).))))))))............... ( -17.20, z-score = -1.28, R) >droEre2.scaffold_4770 10212617 85 + 17746568 CUGCUGGUCCUCCUUGAAGAUCAGCUCACGCUUCUCGAACUCGUUCUCGUUCUUACCACGACGACGAUUCUUGCCUCCUUUUCCU ..(((((((.((...)).)))))))...........(((.(((((.((((.......)))).))))))))............... ( -19.60, z-score = -2.32, R) >droYak2.chr3R 2723855 85 - 28832112 CUGCUGGUCCUCCUUGAAGAUCAGCUCACGCUUCUCGAACUCGUUCUCGUUCUUACCACGACGACGAUUCUUGCCUCCUUUUCCU ..(((((((.((...)).)))))))...........(((.(((((.((((.......)))).))))))))............... ( -19.60, z-score = -2.32, R) >droSec1.super_12 2073498 85 + 2123299 CUGCUGGUCCUCCUUGAAGAUCAGCUCACGCUUCUCGAACUCGUUCUCGUUCUUACCACGACGACGAUUCUUGCCUCCUUUACCU ..(((((((.((...)).)))))))...........(((.(((((.((((.......)))).))))))))............... ( -19.60, z-score = -2.44, R) >droSim1.chr3R 20136823 85 + 27517382 CUGCUGGUCCUCCUUGAAGAUCAGCUCACGCUUCUCGAAUUCGUUCUCGUUCUUACCACGACGACGAUUCUUGCCUCCUUUACCU ..(((((((.((...)).)))))))...........((((.((((.((((.......)))).))))))))............... ( -19.60, z-score = -2.47, R) >droAna3.scaffold_12911 3203782 85 + 5364042 CUGCUGGUCCUCCUUGAAGAUCAGCUCGCGCUUUUCGAACUCGUUCUCGUUCUUACCACGACGACGGUUUUUGCCACCUUUUCCU ..(((((((.((...)).)))))))..(.((.....((((.((((.((((.......)))).))))))))..))).......... ( -20.20, z-score = -1.55, R) >dp4.chr2 10138646 85 + 30794189 CUGUUGAUCCUCCUUGAAGAUCAGCUCGCGCUUCUCGAAUUCGUUCUCGUUCUUACCACGACGACGAUUUUUGCCACCUUUUCCU ..(((((((.((...)).)))))))..(.((.....(((.(((((.((((.......)))).))))).))).))).......... ( -17.60, z-score = -1.81, R) >droPer1.super_3 3968329 85 + 7375914 CUGUUGAUCCUCCUUGAAGAUCAGCUCGCGUUUCUCGAAUUCGUUCUCGUUCUUACCACGACGACGAUUUUUGCCACCUUUUCCU ..(((((((.((...)).)))))))..(((......(((.(((((.((((.......)))).))))).))))))........... ( -17.20, z-score = -1.62, R) >droWil1.scaffold_181108 1049175 85 + 4707319 CUGUUGAUCCUCCUUAAAGAUCAAUUCACGUUUCUCGAAUUCAUUCUCGUUCUUACCACGACGACGAUUUUUGCCACCUUUUCCU ..............(((((((((((((.........))))).....(((((........))))).))))))))............ ( -9.00, z-score = -0.09, R) >droGri2.scaffold_15116 1559495 85 - 1808639 UUGUUGAUCCUCUUUGAAGAUCAGUUCACGCUUCUCGAACUCAUUUUCAUUCUUUCCACGACGACGAUUUUUACCACCUUUUCCC ((((((........(((((((.(((((.........))))).))))))).........))))))..................... ( -13.43, z-score = -1.95, R) >droMoj3.scaffold_6540 12917675 85 - 34148556 CUGUUGAUCCUCUUUAAAGAUCAGCUCACGUUUUUCGAACUCGUUUUCGUUCUUUCCACGACGACGAUUUUUGCCACCUUUUCCU ..(((((((.........)))))))...........(((.(((((.((((.......)))).))))).))).............. ( -15.10, z-score = -1.70, R) >droVir3.scaffold_13047 16599918 85 - 19223366 CUGUUGAUCCUCUUUGAAGAUCAGUUCACGCUUUUCGAAUUCGUUUUCAUUCUUUCCACGACGACGAUUUUUGCCACCUUUUCCU .(((((........(((((((.(((((.........))))).))))))).........)))))...................... ( -10.53, z-score = 0.14, R) >anoGam1.chr2R 32894031 85 - 62725911 CUGCUCAUCCUCCUUGAAGAUCAGUUCGCGCUUCUCCGACUCGUUCUCGUUCUUACCGCGACGACGGUUUUUACCUCCCUUUCCC (((.((.((......)).)).))).(((((......(((.......))).......))))).((.(((....)))))........ ( -11.92, z-score = 0.50, R) >consensus CUGUUGAUCCUCCUUGAAGAUCAGCUCACGCUUCUCGAACUCGUUCUCGUUCUUACCACGACGACGAUUUUUGCCACCUUUUCCU ..(((((((.((...)).)))))))...........(((.(((((.((((.......)))).))))))))............... (-14.09 = -13.45 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:24:56 2011