| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,070,024 – 14,070,125 |
| Length | 101 |
| Max. P | 0.671367 |
| Location | 14,070,024 – 14,070,125 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 91.43 |
| Shannon entropy | 0.15137 |
| G+C content | 0.45101 |
| Mean single sequence MFE | -26.88 |
| Consensus MFE | -21.70 |
| Energy contribution | -21.98 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.671367 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14070024 101 + 27905053 GGCGAUUCCUCUGUCUGCCGUUCCUUCCUGCUGCUGUACUUGGGCAGCGACUAUAGCAACAAUAAUUGCAAACGGUACUCUGCACCUAAUUGCCUGCAAAA (((((((....(((.(((((((......(((((((.......)))))))......((((......)))).)))))))....)))...)))))))....... ( -28.30, z-score = -1.96, R) >droEre2.scaffold_4770 10181359 100 - 17746568 GGCGAUUCCUCCGACCCCUGCUUCUUUUUGUUGCUGUACUUGGGCAGCAAAUAUAGCAACAAUAAUUGCAA-CAGUACUCUGCAACUAAUUGCCUGCAAAA (((((((...........(((......(((((((((((.(((.....))).))))))))))).....))).-(((....))).....)))))))....... ( -26.80, z-score = -2.28, R) >droYak2.chr3R 2678837 100 + 28832112 GGCGAUUCCUACGUCCCCUGAUUCUUUUUGUUGCUGUAUUUGGGCAGCGAAUAUAGCAACAAUAAUUGCAA-CAGUACUCUGCAACUAAUUGCCUGCCAAA (((((((....................(((((((((((((((.....)))))))))))))))...(((((.-........)))))..)))))))....... ( -28.90, z-score = -2.95, R) >droSec1.super_12 2042850 100 - 2123299 GGCGAUUCCUCCGUCUGCCGUUUCUUUUUGCUGCUGUACUUGGGCAGCGAAUAUAGCAACAAUAAUUGCAA-CAGUACUCUGCAACUAAUUGCCUGCAAAA (((((((............(((.((.(((((((((.......)))))))))...)).))).....(((((.-........)))))..)))))))....... ( -25.20, z-score = -1.01, R) >droSim1.chr3R 20106464 100 - 27517382 GGCGAUUCCUUCGUCUGCCGUUUCUUUUUGCUGCUGUACUUGGGCAGCGAAUAUAGCAACAAUAAUUGCAA-CAGUACUCUGCAACUAAUUGCCUGCAAAA (((((((............(((.((.(((((((((.......)))))))))...)).))).....(((((.-........)))))..)))))))....... ( -25.20, z-score = -1.00, R) >consensus GGCGAUUCCUCCGUCUGCCGUUUCUUUUUGCUGCUGUACUUGGGCAGCGAAUAUAGCAACAAUAAUUGCAA_CAGUACUCUGCAACUAAUUGCCUGCAAAA (((((((............(((....(((((((((.......)))))))))...)))........(((((..........)))))..)))))))....... (-21.70 = -21.98 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:24:53 2011