| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,065,856 – 14,065,968 |
| Length | 112 |
| Max. P | 0.726791 |
| Location | 14,065,856 – 14,065,968 |
|---|---|
| Length | 112 |
| Sequences | 13 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 68.23 |
| Shannon entropy | 0.72873 |
| G+C content | 0.52126 |
| Mean single sequence MFE | -34.51 |
| Consensus MFE | -14.34 |
| Energy contribution | -13.94 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.67 |
| Mean z-score | -0.90 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.726791 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14065856 112 - 27905053 CACCAGAAAGACCGCUCACUUUUCGCUCGGACUGGUGGAGCUACGGCGUGGUGCUCUAUCAGCUUCUGCUGGGAGUUGUAAG-UUUUGAGUUCUCGA-UUGAAAAUGUUUGGAU--- ..(((((...((((((((((..((.....))..))))).((....)))))))(((((..((((....))))))))).....(-((((.((((...))-)).))))).)))))..--- ( -32.10, z-score = 0.00, R) >droSim1.chr3R 20102268 112 + 27517382 CACCAGAAAGACCGCUCACUUUCCGCUCGGACUGGUGGAGCUACGGCGUGGUGCUCUAUCAGCUCCUGCUGGGAGUGGUAAG-UUUCGAGUACUCGA-UUAAAAAUGUUUGGAU--- ..(((((...(((((((.((....((..(((((((((((((.((......)))))))))))).))).)).)))))))))...-..((((....))))-.........)))))..--- ( -41.30, z-score = -2.35, R) >droSec1.super_12 2038648 112 + 2123299 CACCAGAAAGACCGCUCACUUUCCGCUCGGACUGGUGGAGCUACGGCGUGGUGCUCUAUCAGCUCCUGCUGGGAGUGGUAAG-UUUAGAGUACUCGA-UUAAAAUUGUUUGGAU--- ..(((((.((((.((.((((..(.((..(((((((((((((.((......)))))))))))).))).)).)..))))))..)-))).((....))..-.........)))))..--- ( -38.30, z-score = -1.51, R) >droYak2.chr3R 2674691 112 - 28832112 CCCCAGAAAGACCGCUUACUUUCCGCUCGGACUGGUGGAGCUACGGCGUGGUGCUCUAUCAGCUCCUGCUGGGAGUGGUGAG-UUUAAAGUCUCCGA-UCUAAAAUGUUUCGCU--- ....(((.((((((((.(((..(.((..(((((((((((((.((......)))))))))))).))).)).)..))))))).)-)))....))).(((-.(......)..)))..--- ( -35.70, z-score = -0.53, R) >droEre2.scaffold_4770 10177187 111 + 17746568 CCCCAGAAAGACCGCUCACUUUCCGCUCGGACUGGUGGAGCUACGGCGUGGUGCUCUAUCAGCUCCUGCUGGGAGUGGUAAG--UUAAACUUCUCGA-UCAAAAAUGUUUCAUU--- .....((((.(((((((.((....((..(((((((((((((.((......)))))))))))).))).)).)))))))))(((--.....))).....-.........))))...--- ( -34.50, z-score = -1.04, R) >droAna3.scaffold_12911 3168254 105 + 5364042 CCCCAGAAAGACCUUUGAGUUUUCGAUCCGAUUGGUGGAGCUACGGUGUGGUGCUCUACCAGUUGCUAUUGGGAGUGGUAAG---UACGAUGUUGAA-GC-UGCAAAUCU------- .....(((.(((......)))))).....((((..((.((((.(((..(.(((((.(((((.((.(....).)).)))))))---))).)..))).)-))-).)))))).------- ( -30.70, z-score = -0.98, R) >dp4.chr2 1648467 113 + 30794189 CCCCCGAGCGACCUCUGAGUUUCCGCUCCGACUGGUGGAGCUAUGGUGUGGUGCUCUACCAGCUUCUGCUGGGAGUGGUAAGCAUUGUCAUUCCUCA-UUGUGAAUCUCUUUCU--- .....(((..........(((((((((((....((((((((...........))))))))(((....))).))))))).))))....((((......-..))))..))).....--- ( -36.10, z-score = -0.85, R) >droPer1.super_6 1671577 113 + 6141320 CCCCCGAGCGACCUCUGAGUUUCCGCUCCGACUGGUGGAGCUAUGGUGUGGUGCUCUACCAGCUUCUGCUGGGAGUGGUAAGCAUUGUCAUUCCUCA-UUGUGAAUCUCUUCCU--- ......((((...((.((((....)))).))((((((((((...........))))))))))....))))(((((.(((..(((.((........))-.)))..))).))))).--- ( -36.20, z-score = -0.81, R) >droWil1.scaffold_181108 1013220 112 + 4707319 CACCAGAAAGGCCAUUUACCUUUCGCUCCGAUUGGUGGAGCUACGGUGUGGUACUCUAUCAGCUGUUGGUUGGUGUGGUAAG---UGU-AUACAAAA-CCAAACGAGAAUGGCAUCU .....((((((.......))))))((((((.....))))))...(((((.((.((((((((((.....)))))))((((...---((.-...))..)-)))...))).)).))))). ( -36.00, z-score = -1.69, R) >droVir3.scaffold_13047 25425 110 + 19223366 CGCCGGAACGACCUCUAACAUUUCGCUCAGAUUGGUGGAGCUAUGGCAUGGUGCUCUACCAGCUGCUCCUGGGUGUGGUAAG--CUGCCGUAUAAGAAGUCUGCAUUUAUUU----- .........(((.(((.......(((((((.((((((((((...........))))))))))......))))))).(((...--..))).....))).)))...........----- ( -29.40, z-score = 1.03, R) >droMoj3.scaffold_6540 17375346 109 - 34148556 CCCCAGAACGACCGCUUACCCUUCGCUCAGAUUGGUGGAGCUAUGGAAUCGUACUCUACCAGCUGCUAUUGGGCGUGGUAAG--UUACUCCAUUCGA--UUUACCUUUGUUUC---- .....(((.((..(((((((...(((((((.(((((((((.((((....)))))))))))))......))))))).))))))--)...))..)))..--..............---- ( -31.10, z-score = -1.55, R) >droGri2.scaffold_14906 10565076 109 + 14172833 CACCGGAGCGACCGCUCAGCUUUCGCUCCGACUGGUGGAGCUAUGGCGUGGUGCUCUACCAGCUGCUCCUCGGUGUGGUAAG--CUACUCUAACUGA--UUCAUUGAUGUUAC---- ...((((((((..((...))..)))))))).((((((((((...........)))))))))).......(((((((((....--))))....)))))--..............---- ( -38.80, z-score = -1.47, R) >anoGam1.chr2R 50716819 87 + 62725911 CCCCGGAACGGCCACUCGAGCCCAGGUCGGACUUCUGGUCGAUCGGCGUGAUCAUGUUCGAGAUGCUGACCAAG--CGCAAG--UUCGUAU-------------------------- ....((..((((..(((((((...(..(((....)))..)((((.....))))..)))))))..)))).)).((--(....)--)).....-------------------------- ( -28.40, z-score = 0.07, R) >consensus CCCCAGAAAGACCGCUCACUUUCCGCUCGGACUGGUGGAGCUACGGCGUGGUGCUCUACCAGCUGCUGCUGGGAGUGGUAAG__UUACAAUACUCGA_UUAAAAAUGUUUUGCU___ ..........(((..................((((((((((.((......))))))))))))(((.....)))...)))...................................... (-14.34 = -13.94 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:24:52 2011