| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,059,380 – 14,059,443 |
| Length | 63 |
| Max. P | 0.585354 |
| Location | 14,059,380 – 14,059,443 |
|---|---|
| Length | 63 |
| Sequences | 6 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 68.29 |
| Shannon entropy | 0.61586 |
| G+C content | 0.32387 |
| Mean single sequence MFE | -6.84 |
| Consensus MFE | -3.60 |
| Energy contribution | -4.02 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.25 |
| Mean z-score | -0.66 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.585354 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14059380 63 + 27905053 CUUAUAAAGAUAUUUUCAGAUAUCUUAGAUUUCCCCGCUUAUUUAUCGUCUGUCUCAUUUGAA ......((((((((....))))))))..................................... ( -5.70, z-score = -0.06, R) >droEre2.scaffold_4770 10170804 63 - 17746568 UUUAUGAAGAUAUUUUUAGAUAUCUUCGAUUUCCCCGCUUAUUUAUCGCCAAACUCAUUUGGA ....((((((((((....))))))))))....................(((((....))))). ( -12.60, z-score = -2.97, R) >droYak2.chr3R 2666936 51 + 28832112 CUUAUAAAGACCUUUUCAGAUAUCUUCGAUUU------------AUCGCCAAUCUCAUUUGGA ..................((((.........)------------))).((((......)))). ( -4.70, z-score = 0.11, R) >droSec1.super_12 2032245 63 - 2123299 CUUAUAAAGAUAUUUUCAGAUAUCUUAGAUUUCCCCGCUUAUUUAUCGUCUGCCUCAUUUGAA ......((((((((....))))))))..................................... ( -5.70, z-score = -0.26, R) >droSim1.chr3R 20095804 63 - 27517382 CUUAUAAAGAUAUUUUCCGAUAUCUUAGAUUUCCCCGCUUAUUUAUCGUUUGCCUCAUUUGAA ......((((((((....))))))))...................(((..((...))..))). ( -5.40, z-score = -0.54, R) >droGri2.scaffold_14906 10557518 59 - 14172833 --UUUAAAGGUAGCAUUAUACACUUUAAUUAUU--AGCUUUGCCUUUGUCCUUUCGCCUCGAG --..((((((((((...................--.)))..)))))))............... ( -6.95, z-score = -0.22, R) >consensus CUUAUAAAGAUAUUUUCAGAUAUCUUAGAUUUCCCCGCUUAUUUAUCGUCUGUCUCAUUUGAA ......((((((((....))))))))..................................... ( -3.60 = -4.02 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:24:51 2011