| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,029,118 – 14,029,216 |
| Length | 98 |
| Max. P | 0.758083 |
| Location | 14,029,118 – 14,029,216 |
|---|---|
| Length | 98 |
| Sequences | 8 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 60.45 |
| Shannon entropy | 0.79787 |
| G+C content | 0.52544 |
| Mean single sequence MFE | -23.68 |
| Consensus MFE | -4.89 |
| Energy contribution | -4.82 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.21 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.758083 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14029118 98 - 27905053 -----GCUGCUCAUCCUCGUGCGACGCCCCGCUGAUCCACUCUGCAUUUAACUCCUCC-C--------------CACUUCAAUACGCACUCAUGCAAAUAUAAUCGGGGCACACGCAC -----.............(((((..(((((((.((.....)).)).............-.--------------...........(((....)))..........)))))...))))) ( -22.90, z-score = -2.79, R) >droSim1.chr3R 20065341 112 + 27517382 -----GCUGCCCAUCCUCCAGCGCCGCCCUGCUGAUCCACUCUGCAUUUAACUCCUCC-CGCAGGACAUGUCCUGACUUCAAUACGCACUCAUGCAAAUAUAAUCGGGGCACACGCAC -----(((((((......(((((......)))))........(((((...........-..(((((....)))))................)))))..........)))))...)).. ( -25.95, z-score = -1.19, R) >droSec1.super_12 2000294 112 + 2123299 -----GCUGCUCAUCCUCCAGCGCCGCCCUGCUGAUCCACUCUGCAUUUAACUCCUCC-CGCAGGACAUGUCCUGACUUCAAUACGCACUCAUGCAAAUAUAAUCGGGGCACACGCAC -----(((((........(((((......))))).........))).........(((-(((((((....)))))..........(((....))).........))))).....)).. ( -24.23, z-score = -0.61, R) >droYak2.chr3R 2637570 103 - 28832112 --------------CCGCCGCCGACGCCCUGCUGAUCCACUCUGCAUUUAACUCCUCC-CGCAGGAUAUGUCCUGACUUCAAUACGCACUCAUGCAAAUAUAAUCGGGGCACACGCAC --------------..(((.((((.....(((.((.....)).)))............-..(((((....)))))..........(((....)))........)))))))........ ( -22.20, z-score = -0.52, R) >dp4.chr2 29121143 100 - 30794189 ------------------ACACAGCACACACCGAGGACAAACAGGAUCUCCUCUCUCCUCCCAGCACAAGGUCUGACUUCAAUACGCACUCAUGCAGAUAUAAUUUGUGCAAACGCAC ------------------.....((.......(((((.....(((....)))...)))))...((((((((((((.(................))))))....)))))))....)).. ( -22.39, z-score = -2.29, R) >droPer1.super_6 4445481 100 - 6141320 ------------------ACACAGCACACACCGAGGACAAACAGGAUCUCCUGUCUCCUCCCAGCACAAGGUCUGACUUCAAUACGCACUCAUGCAGAUAUAAUUUGUGCAAACGCAC ------------------.....((.......(((((...(((((....))))).)))))...((((((((((((.(................))))))....)))))))....)).. ( -27.29, z-score = -3.32, R) >droWil1.scaffold_181089 7677962 107 + 12369635 --------GUUUCCCAUUCUGUUUGGCUCACAGAAUGACCACCGCAUUGGCAUCCCUU---CAGCCCCUGUUCUGACUUCAGUACGCACUCAUGCAAAUAUAAUUUGUACACACACAC --------......((((((((.......))))))))......((...(((.......---..)))...((.(((....))).)))).....(((((((...)))))))......... ( -20.00, z-score = -1.09, R) >droGri2.scaffold_14830 4890457 112 + 6267026 ACAUUUCCAUAUCCCCUGCCCCUGCCCCUGCCACUGCCACUUUCCUUUCCUCGUCCCAGUGGCGCCUCUACUCUGACUGCAAAACGCAGUCAUGCAAAUAUAACACGCAUCU------ ......................(((....(((((((..((............))..)))))))..........(((((((.....)))))))..............)))...------ ( -24.50, z-score = -4.38, R) >consensus ________G_____CCUCCCGCGGCGCCCACCUGAUCCACUCUGCAUUUAACUCCUCC_CGCAGCACAUGUUCUGACUUCAAUACGCACUCAUGCAAAUAUAAUCGGGGCACACGCAC ..........................((((...............................(((........)))..........(((....)))..........))))......... ( -4.89 = -4.82 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:24:50 2011