| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,983,506 – 13,983,606 |
| Length | 100 |
| Max. P | 0.500000 |
| Location | 13,983,506 – 13,983,606 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 80.51 |
| Shannon entropy | 0.31652 |
| G+C content | 0.49417 |
| Mean single sequence MFE | -32.46 |
| Consensus MFE | -19.80 |
| Energy contribution | -18.64 |
| Covariance contribution | -1.16 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 13983506 100 - 27905053 GUGCUCCAAACUUCAAGCUCCAAGCUUCAGAUUCGGCUCCAGCUCCAGCUUCAUCUGAAGUGGCUA-------CGGGGUGGGGGUAAGCAUUUAAAUAAAUGUUUGU ...(((((..((...((((....(((((((((..((((........))))..))))))))))))).-------.))..))))).(((((((((....))))))))). ( -33.10, z-score = -2.20, R) >droEre2.scaffold_4770 10093891 89 + 17746568 -------GUGCUCCAAGCUCC--GAUUCGGCUCCAUCUCCAGCUCCAGCUUCAUCUGAAGUGCCGA--------GAAGUGGGG-UGAGCAUUUAAAUAAAUGUUUGU -------((((((...(((((--(.((((((................(((((....))))))))))--------)...)))))-)))))))................ ( -25.39, z-score = -1.07, R) >droYak2.chr3R 2580517 97 - 28832112 GUGCUCCAAGCUUCAAGCUUC-AGAUUCGGCUCCAUCUCCAGCUCCAGCUUCAUCUGAAGUGCCGA--------GAGGUGGGG-UGGGCAUUUAAAUAAAUGUUUGU ((((.((((((.....)))).-.......(((((((((((.((....(((((....))))))).).--------)))))))))-)))))))................ ( -30.80, z-score = -1.17, R) >droSec1.super_12 1953762 92 + 2123299 -------GUGCUCCAAGCUUCCAGCUUCAGAUUCGGCUCCAGCUCCAGCUUCAUCUGAAGUGGCGA--------GAGGUGGGGUUAAGCAUUUAAAUAAAUGUUUGU -------..((((((..((((((.((((((((..((((........))))..))))))))))).))--------)...))))))(((((((((....))))))))). ( -33.00, z-score = -2.66, R) >droSim1.chr3R 20018469 107 + 27517382 GUGCUCCGAGCUCCAAGCUUCCAGCUUCAGAUUCGGCUCCAGCUCCCGCUUCAUCUGAAGUGGCAAGAGAGGUGGGGGUGGGGGUAAGCAUUUAAAUAAAUGUUUGU .....(((((.((.((((.....))))..)))))))((((.(((((((((((.(((.........)))))))))))))).))))(((((((((....))))))))). ( -40.00, z-score = -1.69, R) >consensus GUGCUCCGAGCUCCAAGCUUC_AGCUUCAGAUUCGGCUCCAGCUCCAGCUUCAUCUGAAGUGGCGA________GAGGUGGGG_UAAGCAUUUAAAUAAAUGUUUGU ..........(((((((((...((((........))))..))))...(((((....))))).................))))).(((((((((....))))))))). (-19.80 = -18.64 + -1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:24:44 2011