| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,982,416 – 13,982,510 |
| Length | 94 |
| Max. P | 0.610135 |
| Location | 13,982,416 – 13,982,510 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 65.68 |
| Shannon entropy | 0.59329 |
| G+C content | 0.34645 |
| Mean single sequence MFE | -20.42 |
| Consensus MFE | -8.21 |
| Energy contribution | -8.25 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.54 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.610135 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13982416 94 + 27905053 CUUGAUGCAAAUACAAAUA----UUUGGAUUUCUAAACAU-UACCAAUUAGAUUUUCCAAUUGGA----------------CUUUGCAGUCUAGUUGGACACACACGGACGCACG---- .....(((.......(((.----(((((....))))).))-).............((((((((((----------------((....))))))))))))...........)))..---- ( -20.60, z-score = -3.05, R) >droEre2.scaffold_4770 10092607 114 - 17746568 CUUCAUGCCAAUCCAAAAAAUUAAUGGCAUAUCUAAAUAU-UGCCAAUCAUUUAUUCUUAUUUGGCUGCUGGAUCCCGUUACUUUGCAGUCCAAUAAGAAGCAAACGAAUACACG---- .....(((................(((((...........-)))))........((((((((.((((((................)))))).)))))))))))............---- ( -24.19, z-score = -2.49, R) >droYak2.chr3R 2579240 114 + 28832112 CUUCAUGUGAAUCCAAACAACCUUUUUGAUAUUUAAAUAU-UACCAAUUAGAUUUUGUAAUUGGACGGUUGGAUCCUGAUACAUUGCAGUCCAAUUAAAAGCAAACCGAUGCACG---- ......(((.(((....(((((....((((((....))))-))(((((((.......)))))))..)))))............((((.............))))...))).))).---- ( -20.02, z-score = -0.70, R) >droSec1.super_12 1952731 111 - 2123299 CUUGAUAUAAAUACAAAUG----UUUUGAUUUCUAAUUGGAUUAUAUUUAGAUUUUCUAAUUGGAAUAUUAGCUCAUGUUACUUUGCAGUCUAGUUGGACACACACGUACGCACG---- ................(((----..((((((((((((((((..((......))..))))))))))).)))))..))).......(((.((((....))))((....))..)))..---- ( -19.50, z-score = -0.96, R) >droSim1.chr3R 20017029 108 - 27517382 CUUGAUAUAAAUACAAAUG----UUUUGAUUUCUAAUUGGAUUGGAUUUAGAUUUUCUAAUUGGAAUGUUCGCUC-------UUUGCAGUCUAGUUGGACACACACACACGUACGCACG ...........(((...((----(..((...(((((((((((((.(....((..((((....))))...))....-------..).)))))))))))))..)).)))...)))...... ( -17.80, z-score = 0.10, R) >consensus CUUGAUGUAAAUACAAAUA____UUUUGAUUUCUAAAUAU_UACCAAUUAGAUUUUCUAAUUGGAAUGUUGGAUC__G_UACUUUGCAGUCUAGUUGGACACACACGGACGCACG____ .......................................................((((((((((.(((................))).)))))))))).................... ( -8.21 = -8.25 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:24:43 2011